Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq223 113 4e-20 >seq223 Length=3708094 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || || | ||| || | |||||| ||||| |||||||||||||| || || | | Sbjct 239841 CCCCCACGGAGACGGAGAACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGAC 239782 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | || || || |||||||| ||| |||| | |||||||||||| || Sbjct 239781 AAGGTGCGCCCATCTTCTAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGA 239722 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| |||||| ||||| | ||| || || || || | Sbjct 239721 ATTCCCTCTTTGTCTTGAATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACT 239662 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || ||||| |||||||| || || ||||| || ||||| Sbjct 239661 TCCAAGGTGATAGTCTTACCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || || | ||| |||| || | ||| || ||||||||||| || ||||| | | Sbjct 240069 CCCCCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGAC 240010 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | || |||| |||||| || ||| | || | ||| || || || ||| Sbjct 240009 AAGGTGCGACCATCTTCCAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGA 239950 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||| ||| ||| || | ||| || || || ||| | Sbjct 239949 ATTCCTTCTTTGTCCTGGATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACT 239890 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| || ||||||||||| ||||| |||||||| Sbjct 239889 TCCAAGGTGATGGTCTTACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||||| ||||| ||||| |||||||||||||| | || ||| | | || Sbjct 240282 AGAACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCT 240223 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| |||||| ||||| | || | ||| || ||||| ||| | ||||| || || Sbjct 240222 TCCAACTGTTTACCCGCGAAGATTAATCTTTGTTGGTCTGGGGGGATTCCTTCTTTATCC 240163 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||||| | | | || ||| | || ||||| ||| |||||| Sbjct 240162 TGAATCTTCGCCTTCACATTCTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATGGTC 240103 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || ||||| ||||| ||||| |||||||| Sbjct 240102 TTACCAGTTAAAGTTTTCACAAAAATTTGCAT 240071 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||| ||||| ||||| || ||||||| || || | | ||| Sbjct 239142 AGAACCAAGTGCAGCGTGGATTCCTTCTGAATATTGTAGTCCGACAACGTGCGACCATCC 239083 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||| ||| | ||||| | |||||| || || | ||||| ||||| Sbjct 239082 TCCAGCTGTTTGCCGGCAAAGATAAGACGCTGCTGATCTGGCGGGATTCCTTCTTTGTCC 239023 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 || || |||||| | ||| || ||| || ||| ||||| ||||| || Sbjct 239022 TGAATTTTAGCTTTCACATTTTCGATCGTGTCAGAGGCCTCTACTTCCAGAGTAATAGTT 238963 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || || || || || || || |||||| Sbjct 238962 TTGCCCGTCAATGTCTTAACGAAGATCTGCATT 238930 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || || || || ||||| ||||| | ||||| || | || |||| || || || Sbjct 241154 GTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAATTGCTTTCCG 241095 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || |||||||||||||| || | || |||||||| |||||| ||| Sbjct 241094 GCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTC 241035 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| ||||||| | || ||||| ||| ||||| |||||||| | || Sbjct 241034 ACATTCTCGATAGTATCAGATGCTTCGACTTCCAGGGTGATGGTTTTGCCGGTCAGAGTC 240975 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| |||||||| Sbjct 240974 TTGACAAAGATTTGCAT 240958 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | ||| | ||| || ||||| || || || ||||| | | Sbjct 239613 CCTCCACGCAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGAC 239554 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | || |||| ||||||||| || |||| | ||| || ||||| ||| Sbjct 239553 AAGGTGCGACCATCTTCCAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGG 239494 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || |||||| || || | | | || || || ||| | Sbjct 239493 ATGCCTTCTTTATCCTGAATCTTTGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCGACT 239434 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| || || || ||||| | ||||||||||| ||||||||| Sbjct 239433 TCCAAGGTGATTGTTTTACCGGTAAGAGTTTTGACAAAAATTTGCATT 239386 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | || |||| || | ||| || |||||||| ||||| ||||| | Sbjct 239387 TTCCACCACGTAGACGAAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGG 239328 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| || | ||||||| ||||| || ||| | ||||| | ||| || || | Sbjct 239327 ACAAGGTACGGCCATCCTCCAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTG 239268 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| || || || || | | | |||||| || || Sbjct 239267 GGATTCCTTCTTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGA 239208 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| |||||| ||||| ||||| || || || || ||||||||||| Sbjct 239207 CTTCCAAGGTAATTGTCTTTCCGGTCAAGGTCTTTACGAATATTTGCAT 239159 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||| |||| ||| | ||||| || || || ||||| ||||||| Sbjct 238931 TTCCACCGCGGAGACGGAGGACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCG 238872 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| || | || |||| || || || ||| | || |||||||||||||| | Sbjct 238871 AAAGGGTGCGGCCATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTG 238812 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGG--GCTC 21124 | | || |||||||| |||||| || || | ||| |||| ||| ||| Sbjct 238811 GGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTTTCGATCGTAT---CGGAAGCTT 238755 Query 21125 CG-TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || | || |||||||||||||| || || || || || || ||||| Sbjct 238754 CGACATCGAGAGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422256513639752