Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq223 145 8e-30 seq142 107 2e-18 seq496 86.0 6e-12 >seq223 Length=3708094 Score = 145 bits (160), Expect = 8e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || ||||||||||||||| | || || ||||| | Sbjct 241414 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACCCTGGAAGTTGAAGCATCG 241473 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | || | ||||||| |||||||| || || || | ||||| Sbjct 241474 GACACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATTCCGCCAGACCAA 241533 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || |||||||||||||| || | |||||||| |||||||||| Sbjct 241534 CAGCGTCTCATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACCCTGTCCGACTACAAC 241593 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| || | || || ||| | || |||| Sbjct 241594 ATCCAGAAAGAATCAACCCTCCATTTGGTTCTGCG 241628 Score = 143 bits (158), Expect = 3e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| || || || ||||| |||||| | || ||||| ||| | Sbjct 239386 AATGCAAATTTTTGTCAAAACTCTTACCGGTAAAACAATCACCTTGGAAGTCGAGGCCTC 239445 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | ||||| | |||| ||| |||| || ||||| ||||||||| | |||| Sbjct 239446 CGACACCATTGAAAACGTT-AAGGCAAAGATTCAGGATAAAGAAGGCATCCCCCCAGACC 239504 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| || | || | ||| ||||||||| |||| || | |||||| | ||||||| Sbjct 239505 AACAAAGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTCGCACCTTGTCTGACTACA 239564 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | ||||||||||| | || || ||| |||| Sbjct 239565 ATATCCAGAAGGAATCTACTCTTCATTTAGT 239595 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| |||||||| ||||| |||||| |||| || || || || Sbjct 238475 ATGCAGATCTTTGTGAAAACCCTCACGGGGAAAACGATCACCCTCGAGGTTGAGGCTTCC 238534 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||| || | ||||||||||| ||||| |||| || Sbjct 238535 GACACCATTGAGAACG-TCAAGGCAAAGATCCAGGACAAAGAGGGAATCCCTCCGGATCA 238593 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | || | || || ||||| |||| |||| |||||||| |||||||| Sbjct 238594 GCAGAGGTTGATTTTTGCAGGAAAACAATTGGAAGACGGCCGCACCCTTTCGGACTACAA 238653 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| ||||| |||| || || Sbjct 238654 CATCCAAAAGGAATCCACCCTTCA 238677 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || | || || |||||||||||| | || || ||||| || Sbjct 241186 ATGCAAATCTTCGTAAAGACTTTGACCGGTAAAACCATCACCCTGGAGGTTGAAGCATCC 241245 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | ||| || | ||||| ||||| ||||| | ||||| Sbjct 241246 GACACCATCGAGAACG-TGAAAGCAAAGATCCAGGACAAGGAGGGAATCCCACCAGACCA 241304 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | |||| ||| || || || |||| || | ||| ||| | |||||||| Sbjct 241305 GCAAAGATTGATCTTCGCCGGAAAGCAATTGGAAGATGGGCGTACCTTGTCGGACTACAA 241364 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| |||||||| |||| || ||||| || Sbjct 241365 CATTCAGAAGGAATCCACACTCCATCTTGT 241394 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || ||||| |||||||| |||| |||||||| || Sbjct 238703 ATGCAGATCTTCGTAAAGACTTTGACCGGCAAGACCATCACTCTCGATGTCGAAGCTTCC 238762 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| |||||| || || | ||||| ||||| ||||| | |||||| Sbjct 238763 GATACGATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 238822 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||| |||| || || || || |||| || | |||||||| ||||||||| Sbjct 238823 CAGAGACTGATCTTTGCCGGAAAGCAATTGGAAGATGGCCGCACCCTTTCGGACTACAAC 238882 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| || |||| || ||| Sbjct 238883 ATCCAGAAAGAATCCACCCTTCAT 238906 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || || |||||| | || ||||||||| || Sbjct 239615 ATGCAGATTTTTGTGAAGACTTTAACCGGTAAGACTATCACCTTGGAAGTCGAAGCCTCC 239674 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| ||| |||| ||||||||||| || || | |||||| Sbjct 239675 GACACCATCGAAAATGTGAAGGCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAG 239734 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || |||||||| || || || | ||||||| | ||| |||||| Sbjct 239735 CAGAGATTGATTTTTGCTGGCAAACAACTAGAAGATGGGCGCACCTTGTCCGATTACAAC 239794 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || ||||| |||| ||||| |||| Sbjct 239795 ATTCAAAAGGAATCCACCTTGCATTTAGT 239823 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | ||||||||||| || || | || || || ||| | Sbjct 238930 AATGCAGATCTTCGTTAAGACATTGACGGGCAAAACTATTACTCTGGAAGTAGAGGCCTC 238989 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | || | ||||||| |||||||| || ||||| | || || Sbjct 238990 TGACACGATCGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCGCCAGATCA 239049 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || |||||||||||||| || | ||||| | |||||||| Sbjct 239050 GCAGCGTCTTATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACGTTGTCGGACTACAA 239109 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 || |||||||| |||||||||| Sbjct 239110 TATTCAGAAGGAATCCACGCTGCA 239133 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||||||||| || | || || || || || ||| | || ||||||||| || Sbjct 239159 ATGCAAATATTCGTAAAGACCTTGACCGGAAAGACAATTACCTTGGAAGTCGAAGCCTCC 239218 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| |||||| ||||||| |||||||| || ||||| | || || Sbjct 239219 GATACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAAGAAGGAATCCCACCAGATCAA 239278 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || ||||| |||| || | || ||| | |||||||||| Sbjct 239279 CAGCGTCTTATCTTTGCCGGTAAACAATTGGAGGATGGCCGTACCTTGTCCGACTACAAC 239338 Query 40870 ATCCAGAAGGA 40880 ||||| ||||| Sbjct 239339 ATCCAAAAGGA 239349 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||||||||||||| | || |||||||| | Sbjct 240958 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAAACCATCACCCTGGAAGTCGAAGCATCT 241017 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || || | ||||| ||||| ||||| | |||||| Sbjct 241018 GATACTATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 241077 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||| |||| || || || || |||| || | ||||||||| |||||||||| Sbjct 241078 CAGAGACTGATCTTTGCCGGAAAGCAATTGGAAGATGGCCGCACCCTCTCCGACTACAAC 241137 Query 40870 ATCCAGAAGGA 40880 |||||||| || Sbjct 241138 ATCCAGAAAGA 241148 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || || |||||||||||| | || || ||||| || Sbjct 240730 ATGCAGATTTTTGTCAAAACTTTGACCGGTAAAACCATCACCCTGGAAGTTGAAGCATCC 240789 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | || | || || | ||||||||||| || || | ||||| Sbjct 240790 GACACCATTGAGAACG-TGAAAGCGAAGATCCAGGACAAAGAGGGGATTCCACCAGACCA 240848 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||| | || | ||| || || ||| |||| || | |||||| | |||||| || Sbjct 240849 ACAGCGATTAATTTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACCTTGTCCGACTATAA 240908 Query 40869 CATCCAGAAGGA 40880 || || ||||| Sbjct 240909 TATTCAAAAGGA 240920 >seq142 Length=137952 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 || || ||||| | |||||||| || || || || || |||| || || ||||| Sbjct 57314 TTTGGAGAGCGAGTCGTGGCCTTTGCAGCAGTAGAAGGAATCTTTTTCAGCGGTAGTTTT 57373 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 || |||||||| ||||| ||||||||||| || ||||| || || ||||||||||| || Sbjct 57374 GCTGCCATATTCTGGCTGAAGAAACGCGGACTTATGCCTGGGCTAACTTTCAGCAATGAA 57433 Query 117149 CTCATCTCCAGGGACGA 117165 ||||| ||||| ||||| Sbjct 57434 CTCATTTCCAGAGACGA 57450 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 116726 AACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGC 116785 || ||||| ||||| || || || ||| || ||||||| || || || || || Sbjct 56915 AAAGACAATGAGCGACACTTTATATCGCATGTTTTGGCCTTCTTTGCAGCATCTGATGGA 56974 Query 116786 ATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGG 116845 || |||||||||||||| |||||||| || |||||| || || | || || || Sbjct 56975 ATTGTCAACGAGAATCTCGTCGAGCGATTTAGTCAGGAAGTTACTGTAACGGAAGCACGA 57034 Query 116846 TGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTC 116905 || || || || || || || |||||||| ||||| || || || ||||| || ||| Sbjct 57035 TGTTTTTATGGTTTCCAAATAGCCATGGAAAACGTCCATTCCGAGATGTACTCCCTTCTC 57094 Query 116906 ATCGACACGTACGT 116919 || || || ||||| Sbjct 57095 ATTGATACCTACGT 57108 >seq496 Length=1672140 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| |||||||||||| | || || || || || Sbjct 1564478 ATGCAGATCTTCGTGAAGACCCTGACGGGTAAAACCATCACCCTTGAGGTGGAGGCTTCC 1564537 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| |||||| || || | ||||| || || || || | || ||| Sbjct 1564538 GATACTATTGAAAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCTGATCAG 1564597 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || ||||| || || || | || || ||| |||||||| Sbjct 1564598 CAGAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGTCGTACTCTCTCTGACTACAAT 1564657 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 1564658 ATCCAGAAGG 1564667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215838194720