Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq168 136 6e-27 seq223 127 3e-24 seq2 87.8 3e-12 >seq168 Length=1844999 Score = 136 bits (150), Expect = 6e-27 Identities = 348/521 (67%), Gaps = 9/521 (2%) Strand=Plus/Minus Query 203135 GCCCAATTATTAGCACCATTTATATTATCGTAATTTTCATTATAATAACAAAAATTATCA 203194 ||||| | ||||| || || | | ||| |||| ||| |||||| | || ||||||||| Sbjct 1481266 GCCCACTGCTTAGCGCCTTTCAGAGAATCATAATGTTCGTTATAAAAGCAGAAATTATCA 1481207 Query 203195 CATAGTTCTTTACGAATAATAGCTTCTTCACAAAAAACTT-CTACCGATTTAGGATATAA 203253 | |||||| | | | ||| ||||| || || ||| ||| | |||||||||| || | Sbjct 1481206 CTCAGTTCTCTTCTGACAATGGCTTCCTC-CATAAAGCTTTCAACCGATTTAGTATGTGT 1481148 Query 203254 TTTTTTATATTTGTTAATTTCTAATATTATTCTTTGAGTTGAAATTTGACCAAAATGTAT 203313 |||||||||||| | ||| || || | ||| || || ||||| || | Sbjct 1481147 TTTTTTATATTTTGATACTTCCAAAATACAACGCTGAACAGATATCATGCCAAAGTGGAA 1481088 Query 203314 CCATGGTGATAAATTACTTATTGCATTAGCATTTGGATCATTTCtttttttagcataatc 203373 ||| ||||||||||| || | ||||| | ||||| |||| ||| | |||| Sbjct 1481087 CCACGGTGATAAATTGCTCAAAGCATTGCCTAAAGGATCGTTTCGTTTACTTTCATATAT 1481028 Query 203374 ttttaatctattttgtataaatatatctaatattttaaatgcatattttGT-ACCAGATT 203432 ||| | | |||| ||| || | || || | | || | | | || ||| | || Sbjct 1481027 TTTCAGACGTTTTTCTATGAAACTTTC-AAGTTCTAGTATCCCTCCCTCGTAACCTGGTT 1480969 Query 203433 TTGCCCAAGAAACAGGTTTAACATTTCTATCAATATTTAATGATTGTTCTG-Cttttttc 203491 ||||| | | ||| ||| || ||||| ||||||| | | | | | || ||| Sbjct 1480968 GAGCCCAGGTTATTTCTTTTACAGTTTCATCAA-CTTTAATGTGTTTCCAGACATTCTTC 1480910 Query 203492 caattattat---ttattttaatatatgtattataagtatgtttaataataggtataaat 203548 |||| ||||| | ||| | | |||| ||| || ||||||||||| |||| ||| Sbjct 1480909 CAATCATTATCAACAAATTTCAGCTTTGTAATATGAGGATGTTTAATAACAGGTGGGAAT 1480850 Query 203549 tCAGTTAAATATTCTGATAATTTATAATTTATTTTATTTCTAATGGTTTTTGCAGAATAT 203608 |||||||| || || | ||| | || ||||| || | || ||| |||||||||| Sbjct 1480849 GGCGTTAAATACTCAGACAGTTTTGAGTTGATTTTGTTCCGTATTGTTCGTGCAGAATAT 1480790 Query 203609 TCTAATTTATTACTAGCAATCCAACATGGTACAATATTATG 203649 || | ||||| ||| |||||| ||||||||||| || Sbjct 1480789 TCCAGTTTATCCGAAGCTTCCCAACAGGGTACAATATTGTG 1480749 Score = 105 bits (116), Expect = 1e-17 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 ||||| |||||| ||||||| | ||||| || |||||||||||||| || Sbjct 1481621 CCAACGTATCCACTTGGATCCCTGCCATCCATGCTATATTTATCATTTAGATATATCGAC 1481562 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 | ||||| ||| |||| | ||||| |||| || ||||| |||||||||||| Sbjct 1481561 CATTCAAGTGCTTGTTCAGGTGTACTGGTCCACTCTAGAATCTTTTTTGCCCAATACATT 1481502 Query 202988 CTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAA 203047 || ||| | ||||||||||| || | | || || |||||| || ||||||||| Sbjct 1481501 CTCAAAAAACCATGCATTTTTCCTTCCTGTACCAACTGAATTTGTGCTGAATTCCATAAG 1481442 Query 203048 TTGTCATGAGT 203058 | |||||||| Sbjct 1481441 TCATCATGAGT 1481431 >seq223 Length=3708094 Score = 127 bits (140), Expect = 3e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| ||||||| | || || || || || || | || | ||||| Sbjct 239159 ATGCAAATATTCGTAAAGACCTTGACCGGAAAGACAATTACCTTGGAAGTCGAAGCCTCC 239218 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || |||||||| || |||||||| || ||||| |||||| Sbjct 239219 GATACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAAGAAGGAATCCCACCAGATCAA 239278 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || |||||||| |||||| | || || || || || || Sbjct 239279 CAGCGTCTTATCTTTGCCGGTAAACAATTGGAGGATGGCCGTACCTTGTCCGACTACAAC 239338 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| ||||| ||| | || |||||| | ||| |||| ||||| || ||| || Sbjct 239339 ATCCAAAAGGAATCTACTCTCCACTTGGTTCTTCGTCTACGTGGTGGAATGCAAATTT 239396 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || |||| || || || || || | || | ||||| | Sbjct 240071 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAGACCATCACCTTGGAAGTCGAAGCTTCT 240130 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||| ||||| ||||||||||| || || || || ||| Sbjct 240131 GACACCATTGAGAATGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCCCCAGACCAA 240190 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || || || || ||||| || || ||| |||| || || || ||||| Sbjct 240191 CAAAGATTAATCTTCGCGGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAC 240250 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || |||||||||||| ||||| | || || ||||| Sbjct 240251 ATTCAGAAGGAATCCACCTTGCATTTGGTTCTACGTCTCCGGGGAGGTAT 240300 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || ||||| |||||||| || || | || |||||||| Sbjct 241414 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACCCTGGAAGTTGAAGCATCG 241473 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| |||||||| || |||||||| || || || || ||| Sbjct 241474 GACACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATTCCGCCAGACCAA 241533 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || ||||| | |||||| |||| || | || || || Sbjct 241534 CAGCGTCTCATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACCCTGTCCGACTACAAC 241593 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || ||||||||||| | ||||||||| | || | ||||||||| Sbjct 241594 ATCCAGAAAGAATCAACCCTCCATTTGGTTCTGCGGCTCCGAGGTGGT 241641 Score = 116 bits (128), Expect = 6e-21 Identities = 174/246 (71%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | |||||| | || ||||||||||| ||| | || | || || Sbjct 238930 AATGCAGATCTTCGTTAAGACATTGACGGGCAAAACTATTACTCTGGAAGTAGAGGCCTC 238989 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| |||||||| || |||||||| || || || ||||| Sbjct 238990 TGACACGATCGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCGCCAGATCA 239049 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | ||||| ||||| || ||||| | |||||| |||| || || || || || Sbjct 239050 GCAGCGTCTTATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACGTTGTCGGACTACAA 239109 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 |||||| || ||||| || |||| |||||| | || | || || || || ||| ||| Sbjct 239110 TATTCAGAAGGAATCCACGCTGCACTTGGTTCTTCGACTTCGTGGAGGCATGCAAATATT 239169 Query 124777 CATAAA 124782 | |||| Sbjct 239170 CGTAAA 239175 Score = 102 bits (112), Expect = 1e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| || || |||||||| || || || ||||||||||| | || ||||| || ||| Sbjct 239927 AAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAACAAAGATTGATCTTTGCCGGTAAA 239986 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || || ||| |||| || || || || ||||||||||| ||||| ||| | || Sbjct 239987 CAGTTGGAAGATGGTCGCACCTTGTCCGACTACAATATTCAAAAGGAATCTACTCTTCAC 240046 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| | ||| | || || ||||| ||| || Sbjct 240047 TTGGTTCTCCGTCTCCGTGGGGGTATGCAAATTT 240080 Score = 100 bits (110), Expect = 4e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || || ||||| || || | || | || || Sbjct 239386 AATGCAAATTTTTGTCAAAACTCTTACCGGTAAAACAATCACCTTGGAAGTCGAGGCCTC 239445 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| || |||| || || ||||| ||||||||||| || || || || | Sbjct 239446 CGACACCATTGAAAACGTTAAGGCA-AAGATTCAGGATAAAGAAGGCATCCCCCCAGACC 239504 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | ||||| || || ||||| || || ||| |||| || || || || | Sbjct 239505 AACAAAGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTCGCACCTTGTCTGACTACA 239564 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| || || ||||| ||| | ||||| ||| | ||| | || || ||||| Sbjct 239565 ATATCCAGAAGGAATCTACTCTTCATTTAGTTCTCCGTCTGCGTGGAGGTAT 239616 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || || ||||| || || | || |||||||| Sbjct 240730 ATGCAGATTTTTGTCAAAACTTTGACCGGTAAAACCATCACCCTGGAAGTTGAAGCATCC 240789 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| ||| || || || ||||| || || ||||| || ||| Sbjct 240790 GACACCATTGAGAACGTGAAAGCGAAGATCCAGGACAAAGAGGGGATTCCACCAGACCAA 240849 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || || || || || ||| |||| || || || |||||| Sbjct 240850 CAGCGATTAATTTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAT 240909 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| || | || |||||| | ||| | || || ||||| Sbjct 240910 ATTCAAAAGGAATCTACCCTCCACTTGGTTCTCCGTCTCCGCGGAGGTAT 240959 >seq2 Length=4278185 Score = 87.8 bits (96), Expect = 3e-12 Identities = 172/252 (68%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 205708 GTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAA 205767 || || | ||||| ||| || | || | || |||||||| | ||||||||| ||||| Sbjct 2655173 GTGTAGTCTGTATTCATGTCTTTGTACTGTGCGCCAAAATGTCTCCATTGAAAGCCATAG 2655232 Query 205768 ACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaat 205827 ||||||||||| ||||| || | || |||| ||||||||| ||| | | | || | Sbjct 2655233 ACTGGACCTAAGTCACCCTCGTCTCGATCAATAAAACCACATTTATCCAAAAATGATCTA 2655292 Query 205828 gatccattttcatcccaaatatggattcctttattttttaGAATAT-TTGTATTAGTTGA 205886 | | ||| | | ||| |||| | ||| | | || | | | | | || || || Sbjct 2655293 GTACTATTGGCGTTCCAGATATTCACACCTCTGCTGGCTA-ATTCTCTGGCATCTGTCGA 2655351 Query 205887 TCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGT 205946 ||| || ||||| | | |||||| |||| |||| |||||||| | ||||| || Sbjct 2655352 TCCTTTGATGAACCACAGAAGTTCTTCGACAACACCTCGCCAAAACACAGTCTTTGTAGT 2655411 Query 205947 AAATAATGGAAA 205958 ||||| ||||| Sbjct 2655412 CAATAACGGAAA 2655423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755451070649600