Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq223 123 2e-23 >seq223 Length=3708094 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| || || ||||| || |||||||| ||| || ||||| |||||| Sbjct 241622 ACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCC 241563 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || ||||||||||||| || || || || || || || ||||| | Sbjct 241562 AGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGAATTCCTTCTTTGTCCTGA 241503 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | ||| | |||||||| |||| || || || | ||| | ||||| Sbjct 241502 ATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCT-TCAACTTCCAGGGTGATGGTTTT 241444 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || ||||| || || || ||||| Sbjct 241443 GCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || |||||||||||||||||| || |||||| ||| || || ||||| ||| Sbjct 239811 GTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTCTAGTTGTTTGCCA 239752 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | | |||||| || || || || ||||| |||||| ||| ||| || Sbjct 239751 GCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTC 239692 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| |||||| | | ||||| || | ||| | || || ||||| | ||| Sbjct 239691 ACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTTACCGGTTAAAGTC 239632 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 239631 TTCACAAAAATCTGCAT 239615 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | || | |||||||| | || || || || ||||| ||||| || | Sbjct 239157 CCTCCACGAAGTCGAAGAACCAAGTGCAGCGTGGATTCCTTCTGAATATTGTAGTCCGAC 239098 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| |||||||| || || |||| |||||||||||||| || || Sbjct 239097 AACGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATAAGACGCTGCTGATCTGGCGGG 239038 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || ||||| |||||| ||| || | ||||| ||||| | | ||| || Sbjct 239037 ATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCGATCGTGTCAGAGGCCTCTACT 238978 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | |||||||| |||| || || || || |||||||| Sbjct 238977 TCCAGAGTAATAGTTTTGCCCGTCAATGTCTTAACGAAGATCTGCAT 238931 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | | | |||||||||| ||||| || |||||||| || || ||| Sbjct 240958 TACCTCCGCGGAGACGGAGAACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGG 240899 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| ||| || | ||| || || ||| | || | ||||| || || || | Sbjct 240898 ACAAGGTGCGACCATCTTCCAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTG 240839 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || ||||| ||||| || || ||| || | || | |||||| | |||| || Sbjct 240838 GAATCCCCTCTTTGTCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCT-TCA 240780 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | ||||| ||||||| |||||| |||||||||||||| Sbjct 240779 ACTTCCAGGGTGATGGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 104 bits (114), Expect = 2e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | ||| | || | |||| ||| || || || ||||||||||| || Sbjct 241414 TACCACCTCGCAGTCTGAGGACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCG 241355 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || ||| ||| || | || ||||| ||| |||| | | ||||| || || | Sbjct 241354 ACAAGGTACGCCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTG 241295 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || ||||||||||| || ||| ||| || | |||| |||||| | |||| || Sbjct 241294 GGATTCCCTCCTTGTCCTGGATCTTTGCTTTCACGTTCTCGATGGTGTCGGATGCT-TCA 241236 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| | ||| | ||||| ||||||| ||| ||||| || || |||||| || Sbjct 241235 ACCTCCAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCATGCCT 241182 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || ||||| || |||||||| ||| | ||||| ||| || Sbjct 241166 ACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 241107 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || ||||| || |||| || | |||||| || || || || ||||||||||| Sbjct 241106 AATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 241047 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| || || | |||| ||||| || | ||| | ||||| Sbjct 241046 ATCTTAGCCTTCACATTCTCGATAGTATCAGATGCT-TCGACTTCCAGGGTGATGGTTTT 240988 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||||| || ||||| || ||||| Sbjct 240987 GCCGGTCAGAGTCTTGACAAAGATTTGCAT 240958 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || ||||| || |||||||| || | ||||| ||| || Sbjct 238911 ACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCC 238852 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || ||||| || |||| || | |||||| || || || || ||||||||||| Sbjct 238851 AATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 238792 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | ||||| || || | ||| ||||| |||| || | || || Sbjct 238791 ATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCT-TCGACATCGAGAGTGATGGTCTT 238733 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||||||| ||| ||||| || ||||||||| || Sbjct 238732 GCCGGTCAAAGTCTTTACGAAGATCTGCATGCCT 238699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827640025224