Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq168 111 3e-19 seq79 84.2 4e-11 >seq168 Length=1844999 Score = 111 bits (122), Expect = 3e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 189420 AACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGA 189479 || |||||||| | ||||||||| ||||||| | ||||||| ||| |||| Sbjct 1481414 AATTCGAAAAATCTATGACTCATGATGACTTATGGAATTCAGCACAAATTCAGTTGGTAC 1481473 Query 189480 GAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGA 189539 ||||||||||||||| ||||||| ||||||||||||| || ||||| || || |||| Sbjct 1481474 AGGAAGGAAAAATGCATGGTTTTTTGAGAATGTATTGGGCAAAAAAGATTCTAGAGTGGA 1481533 Query 189540 CTAGAACACCTGAAGACGC-TTTGAGTTATAGTATCTATTTGAACAACAAGTACGAACTA 189598 | || ||||||||| | || |||| | | | || ||| | || | || || | Sbjct 1481534 CCAGTACACCTGAACAAGCACTTGAATGGTCG-ATATATCTAAATGATAAATATAGCATG 1481592 Query 189599 GACGGCACGGATCCTAACGGATACGTAGGT 189628 || |||| |||||| | |||||||| ||| Sbjct 1481593 GATGGCAGGGATCCAAGTGGATACGTTGGT 1481622 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 189158 GCTTTGAGTAACTTATCTCCGTGGCTACATTTTGGTCATG-TATCCGCACAACGTGTTGC 189216 |||||||| || ||||| |||||| | || ||||| |||| |||| | || ||| | Sbjct 1481064 GCTTTGAGCAATTTATCACCGTGGTTCCACTTTGG-CATGATATCTGTTCAGCGTTGTAT 1481122 Query 189217 CTTAGAAGTATTAAAATGTATACGAGAAAGCaaaaaaaaC--GTTGAAACGTTTATAGAT 189274 || ||||||| ||||| || | | || || | ||| ||||||| ||||| || Sbjct 1481123 TTTGGAAGTATCAAAATATAAA--AAAACACATACTAAATCGGTTGAAAGCTTTATGGAG 1481180 Query 189275 GAAATAATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAACAAACATTATGAT 189334 ||| ||||| ||||||||||| |||||||| || | |||||| ||||||||||| Sbjct 1481181 GAAGCCATTGTCAGAAGAGAACTGAGTGATAATTTCTGCTTTTATAACGAACATTATGAT 1481240 >seq79 Length=1978966 Score = 84.2 bits (92), Expect = 4e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 135610 GAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATATAGAACTTAG-GAGATG 135668 |||||| || | ||| || | | | || ||||||||||| || | |||| | | ||| Sbjct 415248 GAGTGGGCTGCTTGGCAAGACAGAGGTGACCCTGTTTTGCACATTG-ACTTGGTCAAATG 415306 Query 135669 GGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCTAATGG 135728 ||| || | | | |||| || || || |||||||| | | |||| | || | ||| Sbjct 415307 GGCAGACTTATATCTTATTGCTCCTTTGGATGCAAATACTCTGGGAAAACTTGCCAGTGG 415366 Query 135729 TATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTCAT 135788 || ||||| || | || || | ||| ||||| |||||| | | ||||| || | Sbjct 415367 AATGTGCGACAACATTCTTACTTGCGTTGCGAGAGCTTGGGATCCCACAAAACCGCTGCT 415426 Query 135789 TTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCT 135828 || |||||||||||||| || ||||||||||| ||| Sbjct 415427 ATTTTGTCCTGCAATGAACACAAAAATGTGGGAACACCCT 415466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923190776140880