Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq201 113 5e-20 seq246 111 2e-19 seq346 109 6e-19 seq490 105 8e-18 seq223 93.3 5e-14 seq496 86.0 7e-12 >seq201 Length=1490881 Score = 113 bits (124), Expect = 5e-20 Identities = 81/92 (88%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 876237 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 876178 Query 60117 TCACCACTATACTACCGAGGA-TTGAATATAT 60147 | ||||||||||||||||||| ||||| |||| Sbjct 876177 TTACCACTATACTACCGAGGACTTGAAGATAT 876146 >seq246 Length=2929822 Score = 111 bits (122), Expect = 2e-19 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 60039 AACAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCG 60098 |||||| || || | ||||| | |||| |||| ||||||||||||| ||||||||| Sbjct 1760637 AACAAAAAAATTTTAGTTAAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCG 1760696 Query 60099 CGTGACAGGCGGACATACTCACCACTATACTACCGAGGATT 60139 |||||||||||| ||||| ||||||||||||||||||||| Sbjct 1760697 CGTGACAGGCGGGGATACTTACCACTATACTACCGAGGATT 1760737 >seq346 Length=1589992 Score = 109 bits (120), Expect = 6e-19 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATT-TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 || |||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 422224 ATAAAAAATAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 422283 Query 60113 ATACTCACCACTATACTACCGAGGA 60137 ||||| ||||||||||||||||||| Sbjct 422284 ATACTGACCACTATACTACCGAGGA 422308 >seq490 Length=1461854 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 687765 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 687706 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 687705 TACTACCGAGGAT 687693 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| || | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 687923 AAATATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 687864 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 687863 TTACCACTATACTACCGAGGA 687843 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 687468 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 687409 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 687408 TACTACCGAGGA 687397 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 687616 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 687557 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 687556 TACTACCGAGGA 687545 >seq223 Length=3708094 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||| | |||| ||||| ||||| ||||| || | || || ||| | || || | || Sbjct 241389 ATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGACAAGGTACGCCCATCTTCCAATTG 241330 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||| || ||||| || | || |||||||| | || | | |||||||||| ||| || Sbjct 241329 CTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTT 241270 Query 43100 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | ||| | || | | |||||| | ||| || || | ||||||||||| || || Sbjct 241269 TGCTTTCACGTTCTCGATGGTGTCGGATGCTTCAACCTCCAGGGTGATGGTTTTACCGGT 241210 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 | |||||||| ||||||||||| Sbjct 241209 CAAAGTCTTTACGAAGATTTGCAT 241186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 || |||||||| ||| ||||||||||| |||||||| | || || ||| | || ||| Sbjct 239823 ACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTCT 239764 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || || || ||||| || || | || ||||||||| | || | | ||| |||| | || Sbjct 239763 AGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGT-CTTG 239705 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | |||| || | | | | |||||| | ||| || || | ||||| || || Sbjct 239704 AATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTT 239645 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| ||||| ||||| || ||||| Sbjct 239644 ACCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 86.0 bits (94), Expect = 7e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||||| | || || || || || ||||| || | ||| || || | Sbjct 241628 CGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA 241569 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || || || || ||||| ||||| ||||| | ||| | | || ||| Sbjct 241568 TCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGAATTCCTTCTTTG 241509 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| |||| | ||| | | | | ||||| | ||| || || | ||||| Sbjct 241508 TCC-TGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAACTTCCAGGGTGAT 241450 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||| ||||| || || || ||||||||||| Sbjct 241449 GGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||||||||| || || | || || || | || || | ||||||||| ||||| Sbjct 240920 TCCTTTTGAATATTATAGTCGGACAAGGTGCGACCATCTTCCAACTGCTTACCGGCGAAA 240861 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||| ||||| | || | | ||| |||||| ||| || ||| | || Sbjct 240860 ATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCCTGGATCTTCGCTTTCACGTTC 240801 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| | ||| || || | ||||||||||| || || | || || ||| Sbjct 240800 TCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTTTTACCGGTCAAAGTTTTGACA 240741 Query 43173 AAGATTTGCAT 43183 || || ||||| Sbjct 240740 AAAATCTGCAT 240730 >seq496 Length=1672140 Score = 86.0 bits (94), Expect = 7e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || |||||||| |||| ||||| || | || ||||| || |||||||| || | Sbjct 1564667 CCTTCTGGATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGA 1564608 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | || |||||| || | || | | ||||||||| ||| || |||| | Sbjct 1564607 TCAATCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTT 1564548 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | || ||| | ||||| || | ||||||||||| ||||| || ||||| || | Sbjct 1564547 CAATAGTATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGA 1564488 Query 43174 AGATTTGCAT 43183 |||| ||||| Sbjct 1564487 AGATCTGCAT 1564478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813868890160