Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq223 95.1 2e-14 seq496 86.0 9e-12 seq257 86.0 9e-12 >seq223 Length=3708094 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | |||||| | ||||| || | || ||||| || || || || || ||| Sbjct 238701 CCTCCGCGAAGTCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAA 238642 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || || || ||||||||||| ||||||||||| || |||||||||||||| Sbjct 238641 AGGGTGCGGCCGTCTTCCAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAGGG 238582 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| ||||| || || Sbjct 238581 ATTCCCTCTTTGTCCTG 238565 Score = 93.3 bits (102), Expect = 6e-14 Identities = 94/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 || ||||| || || ||||| ||| || || || ||||| || | || | | ||| || Sbjct 239823 ACTAAATGCAAGGTGGATTCCTTTTGA-ATGTTGTAATCGGACAAGGTGCGCCCATCTTC 239765 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || |||||| ||||||||||||||||| ||||| || || |||||||| ||||| ||||| Sbjct 239764 TAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTG 239705 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || | ||||||||| ||| || ||||| || || || | || | | ||| || Sbjct 240051 ACCAAGTGAAGAGTAGATTCCTTTTGA-ATATTGTAGTCGGACAAGGTGCGACCATCTTC 239993 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| || ||||| ||||||||||| ||||| || |||||||||||||| || || Sbjct 239992 CAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTG 239933 >seq496 Length=1672140 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || || || ||||| | | ||| |||| |||||| |||||||| |||||||| Sbjct 1564659 ATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTC 1564600 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || ||||||||||| || || || Sbjct 1564599 TGCTGATCAGGTGGAATTCCTTCCTTGTCCTG 1564568 >seq257 Length=1448838 Score = 86.0 bits (94), Expect = 9e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 |||||| | ||| | | |||||||| | || |||||||| || || ||||| || Sbjct 383047 TCCACCACGAAGGCGAAGCACCAAATGGAGCGTGGATTCTTTCTGGATGTTGTAATCGGA 383106 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||||| | ||| || | ||| || || ||||||||||| | ||| ||||| || || Sbjct 383107 AAGAGTTCTTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAACCGTTGTTGATCAGGGGG 383166 Query 146170 AATTCCT 146176 ||| ||| Sbjct 383167 AATCCCT 383173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743521548490240