Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq223 116 2e-21 >seq223 Length=3708094 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| |||||||||||||| || ||| | || ||||| ||||| || || || Sbjct 241149 TTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAATTGCTTTCCGGCAAA 241090 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || | ||||||||| || | | ||||||||| ||||| ||| | || Sbjct 241089 GATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATT 241030 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | | |||||| |||| ||||||||||||||||| ||||| || || Sbjct 241029 CTCGATAGTATCAGATGCTTCGACTTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTGAC 240970 Query 34378 AAAGATCTGCAT 34389 |||||| ||||| Sbjct 240969 AAAGATTTGCAT 240958 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | || |||| || | || ||||||||| ||||||||||| || Sbjct 238930 TCCACCGCGGAGACGGAGGACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGA 238871 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || ||||| ||||| || || || || || | ||||||||| || Sbjct 238870 AAGGGTGCGGCCATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGG 238811 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | |||| ||||| | |||||| Sbjct 238810 GATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGAC 238751 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| | ||| || || ||||||||||| Sbjct 238750 ATCGAGAGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || || ||||||| ||| | || ||| || || ||||||||||| || Sbjct 238701 CCTCCGCGAAGTCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAA 238642 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| ||||| || || ||||| ||||| | || |||||| || || Sbjct 238641 AGGGTGCGGCCGTCTTCCAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAGGG 238582 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||| ||||| |||||| ||| | | | || | |||| | || || Sbjct 238581 ATTCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCAACC 238522 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || ||||| |||||||||||||||||||| Sbjct 238521 TCGAGGGTGATCGTTTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 238475 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || |||| ||| |||| || | || ||||||||| ||||||||||||||| Sbjct 241640 CCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAC 241581 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||| ||||| || || ||||| ||||| ||||| || Sbjct 241580 AGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGA 241521 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| || ||| ||||| | || | || | || | | ||| || Sbjct 241520 ATTCCTTCTTTGTCCTGAAT-TTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAAC 241462 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||||||||| || || ||||| || ||||| ||||| Sbjct 241461 TTCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || |||| ||| | ||| ||| || || || || ||||||||| Sbjct 240956 CCTCCGCGGAGACGGAGAACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGAC 240897 Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | | || || | || ||||||||||| || |||||||| | ||||| ||||| || Sbjct 240896 AAGGTG-CGACCATCTTCCAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGG 240838 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||| ||||| ||| || ||||| | | | || | |||| | ||| | Sbjct 240837 AATCCCCTCTTTGTCCTGGATC-TTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAA 240779 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||||||||||| ||||| | |||||| ||||| |||||||| Sbjct 240778 CTTCCAGGGTGATGGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| || || || || || | || ||| ||||| ||||||||||| ||| Sbjct 241412 CCACCTCGCAGTCTGAGGACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGAC 241353 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || ||||| ||||| || ||||| || | | |||||||| || Sbjct 241352 AAGGTACGCCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGG 241293 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||| |||||||| | | | || | |||| | ||| || Sbjct 241292 ATTCCCTCCTTGTCCTGGATC-TTTGCTTTCACGTTCTCGATGGTGTCGGATGCTTCAAC 241234 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| ||||| | ||| || || ||||| ||||| Sbjct 241233 CTCCAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 241186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069944656320