Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq494 98.7 8e-16 seq2 84.2 2e-11 >seq494 Length=1178071 Score = 98.7 bits (108), Expect = 8e-16 Identities = 123/166 (74%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGT 20458 ||||||| | || || || || |||| | ||||| | || |||||| | ||||| | Sbjct 861940 AATGGCTCTACCACCCTGCCAC-TGCTTGGTGCAATTCTCTGTAGCTAATGAAGAATTAT 861998 Query 20459 CGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAA 20518 | ||| | ||||||||||| || |||||||| || || || | || || ||||| | Sbjct 861999 CTTGTTTACTGTATCAACGAAGTGCAGATATGGGTCTTGGAGTGTCATTTAACATTGCCA 862058 Query 20519 GTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564 ||||| | || || ||||||||| | |||||||| |||| |||||| Sbjct 862059 GTTATACCCTTCTCACGTATATGTTAGCACATGTCACAGGTTTAAA 862104 >seq2 Length=4278185 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 20371 TGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGC 20430 || |||||||| || ||| | ||| |||||| | || || || || |||| | Sbjct 2654985 TGTGCCTGGAATCCTGTTGATATTCCTAAGATGGCTCTACCACCCTGCCAC-TGCTTGGT 2654927 Query 20431 -CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 ||||| || || |||| | || || || ||| | ||||||||||| || || || Sbjct 2654926 GCAATTCTATGTAGCTAGTGGAGAGTTATCTTGTTTACTGTATCAACGAAGTGCAGACAT 2654867 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||| || || || || || || || || |||||||| || || ||||||||| | ||||| Sbjct 2654866 GGGTCTTGGAGTGCCATTTAACATCGCCAGTTATGCCCTTCTCACGTATATGTTGGCACA 2654807 Query 20550 TGTTACAG 20557 ||| |||| Sbjct 2654806 TGTCACAG 2654799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399181460441290