Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq223 122 8e-23 seq2 107 2e-18 seq142 93.3 4e-14 >seq223 Length=3708094 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| |||||||||||| |||| || ||||| |||||| | || |||||| | || Sbjct 241185 CATGCAAATCTTCGTAAAGACTTTGACCGGTAAAACCATCACCCTGGAGGTTGAAGCATC 241244 Query 31252 CGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||| |||| || || || || ||||||||| || | || || |||| Sbjct 241245 CGACACCATCGAGAACGTGAAAGCAAAG-ATCCAGGACAAGGAGGGAATCCCACCAGACC 241303 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||| | | || ||||| || || || |||||||| || || || || | Sbjct 241304 AGCAAAGATTGATCTTCGCCGGAAAGCAATTGGAAGATGGGCGTACCTTGTCGGACTACA 241363 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||| || ||||| || || ||||| || || |||||| | || |||| Sbjct 241364 ACATTCAGAAGGAATCCACACTCCATCTTGTCCTCAGACTGCGAGGTGGTA 241414 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || ||| |||| || ||||| |||||| | || |||||| | ||| Sbjct 240730 ATGCAGATTTTTGTCAAAACTTTGACCGGTAAAACCATCACCCTGGAAGTTGAAGCATCC 240789 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| || || |||||| || || | || || ||||| Sbjct 240790 GACACCATTGAGAACGTGAAAGCGAAGATCCAGGACAAAGAGGGGATTCCACCAGACCAA 240849 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| |||| ||||| || || ||||||||||| | || || ||| ||||| Sbjct 240850 CAGCGATTAATTTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAT 240909 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| ||||| || || || |||| || Sbjct 240910 ATTCAAAAGGAATCTACCCTCCACTTGGTTCT 240941 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||||||||| |||| || || || || ||| | || || ||| | || Sbjct 239158 CATGCAAATATTCGTAAAGACCTTGACCGGAAAGACAATTACCTTGGAAGTCGAAGCCTC 239217 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | | |||| ||||| | ||| |||||| ||||| | || || || || Sbjct 239218 CGATACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAAGAAGGAATCCCACCAGATCA 239277 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||||| || || || || ||||| ||||| || || || ||| || || Sbjct 239278 ACAGCGTCTTATCTTTGCCGGTAAACAATTGGAGGATGGCCGTACCTTGTCCGACTACAA 239337 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| ||||| ||||| ||||| || |||| ||| Sbjct 239338 CATCCAAAAGGAATCTACTCTCCACTTGGTTCTT 239371 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || || ||||| |||||| | || || || | ||| Sbjct 239387 ATGCAAATTTTTGTCAAAACTCTTACCGGTAAAACAATCACCTTGGAAGTCGAGGCCTCC 239446 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || || || ||| | ||| || |||||| | || || ||||| Sbjct 239447 GACACCATTGAAAACGTTAAGGCAAAGATTCA-GGATAAAGAAGGCATCCCCCCAGACCA 239505 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | |||| ||||| ||||||||||||||||| | || || || || || Sbjct 239506 ACAAAGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTCGCACCTTGTCTGACTACAA 239565 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| ||||||||| | || || | ||| | || |||| Sbjct 239566 TATCCAGAAGGAATCTACTCTTCATTTAGTTCTCCGTCTGCGTGGAGGTA 239615 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || |||||||||||| |||| ||||| || ||||| |||| || ||| | || Sbjct 238702 CATGCAGATCTTCGTAAAGACTTTGACCGGCAAGACCATCACTCTCGATGTCGAAGCTTC 238761 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||||| ||||| | || ||||||||| || | || || ||||| Sbjct 238762 CGATACGATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCACCAGACCA 238821 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || || || |||||||| || | || || || Sbjct 238822 GCAGAGACTGATCTTTGCCGGAAAGCAATTGGAAGATGGCCGCACCCTTTCGGACTACAA 238881 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || |||||||| || |||||| |||| || Sbjct 238882 CATCCAGAAAGAATCCACCCTTCATTTGGTCCT 238914 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| |||||||| || || | || || || | || Sbjct 238931 ATGCAGATCTTCGTTAAGACATTGACGGGCAAAACTATTACTCTGGAAGTAGAGGCCTCT 238990 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || ||| | ||| |||||| ||||| | ||||| || ||| Sbjct 238991 GACACGATCGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCGCCAGATCAG 239050 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||||||| |||| || | || || || || || Sbjct 239051 CAGCGTCTTATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACGTTGTCGGACTACAAT 239110 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| || ||||| || || || |||| ||| |||| Sbjct 239111 ATTCAGAAGGAATCCACGCTGCACTTGGTTCTTCGACT 239148 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||||||||| |||||||| |||||| | || || ||| | || Sbjct 240958 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAAACCATCACCCTGGAAGTCGAAGCATCT 241017 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || | || ||||||||| || | || || |||||| Sbjct 241018 GATACTATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 241077 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || || || |||||||| || | ||| || ||| Sbjct 241078 CAGAGACTGATCTTTGCCGGAAAGCAATTGGAAGATGGCCGCACCCTCTCCGACTACAAC 241137 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || ||||||||||| ||||| |||| ||| Sbjct 241138 ATCCAGAAAGAATCGACCCTTCACTTGGTTCTT 241170 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || | || || || || |||||| | || || || | ||| Sbjct 239843 ATGCAAATTTTTGTGAAAACGTTAACTGGTAAGACCATCACCTTGGAAGTCGAGGCCTCC 239902 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| |||||| | ||| |||||| ||||| | || || || || Sbjct 239903 GACACCATCGAAAACGTCAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAA 239962 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || || || |||||||||||||| | || || ||| || || Sbjct 239963 CAAAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAAT 240022 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| ||||| |||||||| |||| || Sbjct 240023 ATTCAAAAGGAATCTACTCTTCACTTGGTTCT 240054 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 || || |||||| || || || || || || || || |||||||||||| |||| ||||| Sbjct 238468 ATAAATCATGCAGATCTTTGTGAAAACCCTCACGGGGAAAACGATCACCCTCGAGGTTGA 238527 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | ||||||| | || | ||||| || || || |||||| || || | || | Sbjct 238528 GGCTTCCGACACCATTGAGAACGTCAAGGCAAAG-ATCCAGGACAAAGAGGGAATCCCTC 238586 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | || |||||| | | || || || || ||||| ||||||||| || | | Sbjct 238587 CGGATCAGCAGAGGTTGATTTTTGCAGGAAAACAATTGGAAGACGGCCGCACCCTTTCGG 238646 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 | || ||||| ||||| ||||| || ||||| |||| || ||||| Sbjct 238647 ACTACAACATCCAAAAGGAATCCACCCTTCACTTGGTGCTCAGACT 238692 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||| | || || || || |||||| | || || ||| | || Sbjct 240071 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAGACCATCACCTTGGAAGTCGAAGCTTCT 240130 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || ||| || ||||| | || || ||||| Sbjct 240131 GACACCATTGAGAATGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCCCCAGACCAA 240190 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | |||| ||||| || |||||||||||||| | || || ||| |||||| Sbjct 240191 CAAAGATTAATCTTCGCGGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAC 240250 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || | ||| |||| || | || |||| |||| Sbjct 240251 ATTCAGAAGGAATCCACCTTGCATTTGGTTCTACGTCTCCGGGGAGGTA 240299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||| | || || || || |||||| | || || ||| | ||| Sbjct 239615 ATGCAGATTTTTGTGAAGACTTTAACCGGTAAGACTATCACCTTGGAAGTCGAAGCCTCC 239674 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||||| || || || ||| | | |||| || || | || || ||||| Sbjct 239675 GACACCATCGAAAATGTGAAGGCAAAGATTCAAG-ACAAAGAGGGAATTCCACCAGACCA 239733 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || ||||||||||| | ||||| || || |||||| || Sbjct 239734 GCAGAGATTGATTTTTGCTGGCAAACAACTAGAAGATGGGCGCACCTTGTCCGATTACAA 239793 Query 31372 CATTCAAAAAGAATCGAC 31389 ||||||||| ||||| || Sbjct 239794 CATTCAAAAGGAATCCAC 239811 >seq2 Length=4278185 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23006 ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTG 23065 |||||| ||||||| || ||||| ||||||||||| || || | || || | | Sbjct 516484 ACAAACATGTTGACAGCAATCGATGCAAGATTGCAAACCGCGATTTCATCGGGGCTGGAA 516543 Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 || ||||||||||||||||| || ||||| || || || || || | ||| ||| ||| Sbjct 516544 TATTCTACAATTTCGGTACAAAGGTTGCTGCATTTAATAGTTCCAACATTCTGCTGATTG 516603 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 ||| ||||| || ||| || || |||||||| || || || ||||| ||||| || Sbjct 516604 GATTTGCGATTACAGTGATCTTTATACAGCATGTAAGGTGTTCCGGTCTCAACCTGTGAG 516663 Query 23186 TCGATGATCGCT 23197 | || || ||| Sbjct 516664 TTTATAATGGCT 516675 Score = 102 bits (112), Expect = 7e-17 Identities = 175/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797 || || || || ||| | || || ||| ||||| ||||| ||| | |||| |||| Sbjct 517506 GGAGTCGCCGCTGAGTAGAGGGTGGGGGAAGCGTGAGTAAAATATTTTTCTGACAATAGA 517565 Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857 ||||| || || || || || || || || || || ||||| | ||||||||||| Sbjct 517566 TTGTAAGTCTCAATAGCTTTGTCGATATCATCGCCATGAATACCAACTGCGACGCGCATT 517625 Query 23858 ATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC 23917 | | | || ||||| || ||| ||| |||||||| | || || || | | Sbjct 517626 AATAAATGCTGCGGTCTTTCAACCACTTTGCCATTAATTTTCAGCAAGTAACTTCGCTCC 517685 Query 23918 ATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTC 23977 | ||||| ||||||||||||| |||||| ||||| ||||| | | ||||| || ||| Sbjct 517686 AGGGTTTTGAATCCAAAATAGTTATAGTTGAAGTCTCGATCATAAATAATGGCAGAGTTC 517745 Query 23978 AAACGGTACGCATT 23991 || | || ||||| Sbjct 517746 AATCTGTCGGCATT 517759 Score = 89.7 bits (98), Expect = 5e-13 Identities = 167/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 22427 GCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGG 22486 || || | |||| | | || ||| |||||| | || || ||||| || | ||| || Sbjct 515744 GCTGTGAGATCTGTTAGCAAATGTGGGTTCATGATCTGGAATTCGCCAGAGAGGACACGC 515803 Query 22487 CGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCG 22546 | | || | ||| ||| | | |||| ||||||||||| ||||| || || || Sbjct 515804 CTTGTATAGACATTGCTGGTGTAAGCCTCGATCGATTCATTGTTACCCAGAATTTGCGCT 515863 Query 22547 GTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATT 22606 || || || || ||||| || || | |||| ||||||| | || || || | ||| Sbjct 515864 GTAGAGGCAGTTGGCATTGGTGCAATAAGTAAAGAGTTTCGGATTCCATGTTTAGCTATT 515923 Query 22607 TTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCG 22666 ||| ||| || | ||||||||| ||||| | |||||| || || ||||||||| Sbjct 515924 TTAGCCTTTAGTGCTGCCCAGTCCCAAAGATCTGTCGGCGTAAC---GTTCCACATATCA 515980 Query 22667 TATTG 22671 ||||| Sbjct 515981 TATTG 515985 >seq142 Length=137952 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 57509 TGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGA 57568 ||||||| | || ||| ||||| | | || || || || || || ||| ||||| Sbjct 56668 TGAACCATTGCTGAGAGAAAATCCAAGACGCTTCGTTATTTTCCCAATCCAATGGCCAGA 56727 Query 57569 CATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCT 57628 ||||||||| |||||||| || |||||||| || |||||||| || |||||||| || || Sbjct 56728 CATTTGGAAAATGTACAAGAAAGCAGAAGCTTCTTTTTGGACTGTTGAAGAAGTGGATCT 56787 Query 57629 GTCTAAGGATCTGAGCGA 57646 || |||| | |||| || Sbjct 56788 CTCAAAGG-TGTGAGAGA 56804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763491374240