Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 4e-12 seq142 84.2 4e-11 >seq2 Length=4278185 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35234 ACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGC 35293 ||||| |||| | || ||| |||| ||||| |||||||| ||||||||||| || Sbjct 2655411 ACTACAAAGACTGTGTTTTGGCGAGGTGTTGTCGAAGAACTTCTGTGGTTCATCAAAGGA 2655352 Query 35294 AATACAGACGCCAAAGAATTGGCCAAGAAGAAG-ATACACATCTGGAACGCTAATGGGTC 35352 ||||| |||| |||||| ||| || ||| | | | ||||||||||| ||| | | Sbjct 2655351 TCGACAGATGCCAGAGAATTAGCC-AGCAGAGGTGTGAATATCTGGAACGCCAATAGTAC 2655293 Query 35353 GCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGT 35412 | ||||||||| | | || || ||| ||| ||||| || || || || || Sbjct 2655292 TAGATCATTTTTGGATAAATGTGGTTTTATTGATCGAGACGAGGGTGACTTAGGTCCAGT 2655233 Query 35413 ATACGGATTCCAATGGCGTCATTTTGGTGC 35442 || || || |||||| | |||||||| || Sbjct 2655232 CTATGGCTTTCAATGGAGACATTTTGGCGC 2655203 >seq142 Length=137952 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||| ||||| ||||||||||| || || ||| || || |||| |||||| Sbjct 57329 GTGGCCTTTGCAGCAGTAGAAGGAATCTTTTTCAGCGGTAGTTTTGCTGCCATATTCTGG 57388 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| | || || ||||||| || || | | |||||| ||||||| || ||| Sbjct 57389 CTGAAGAAACGCGGACTTATGCCTGGGCTAACTTTCAGCAATGAACTCATTTCCAGAGAC 57448 Query 102038 GAAG 102041 |||| Sbjct 57449 GAAG 57452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989577381538510