Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 161 1e-34 seq142 96.9 4e-15 >seq2 Length=4278185 Score = 161 bits (178), Expect = 1e-34 Identities = 187/250 (75%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 || |||||||| | || | ||| |||| | | ||| || |||||||| ||||| Sbjct 517488 CTTGACATTTGTGGGCGCGGAGTCGCCGCTGAGTAGAGGGTGGGGGAAGCGTGAGTAAAA 517547 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAA 63759 ||||||| || | ||||||||| |||||||||||| ||| |||| ||| | ||||| Sbjct 517548 TATTTTTCTGACAATAGATTGTAAGTCTCAATAGCTTTGTCGATAT--CATCGCCATGAA 517605 Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTT 63819 | || |||||||| |||||||| | ||||| ||||||||||| | |||| || |||| Sbjct 517606 TACCAACTGCGACGCGCATTAATAAATGCTGCGGTCTTTCAACCACTTTGCCATTAATTT 517665 Query 63820 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63879 ||| |||||| | |||| ||||| || ||||||||||| || |||||||| | Sbjct 517666 TCAGCAAGTAACTTCGCTCCAGGGTTTTGAATCCAAAATAGTTATAGTTGAAGTCTCGAT 517725 Query 63880 CGTAAATAAT 63889 | |||||||| Sbjct 517726 CATAAATAAT 517735 Score = 138 bits (152), Expect = 1e-27 Identities = 239/344 (69%), Gaps = 5/344 (1%) Strand=Plus/Plus Query 62787 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62846 ||||||||||||||||||||| |||| || |||| ||||||||||| ||||| || || Sbjct 516340 ATACCGATAGGTCTATGTCTCATATTGGATCTTTCGGCTTCTGGAATTGGATAGTAGTTG 516399 Query 62847 ATATCTATAATTTTATT-GAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAG 62905 ||||| || ||||| || || | | || ||| | |||| ||| || || ||||| Sbjct 516400 ATATCGATGATTTTGTTCAAGTTATATG-CAACAATTTTGGTCACTTCTTTTAGTTTTTT 516458 Query 62906 AAAATCAAATCGCCCATCT---ATTACAAACATGTTCAATGCAACAGATGCCAGATTACA 62962 |||| | | |||| | ||||||||||| | |||| ||||| ||||| || Sbjct 516459 GAAATTGTAGGTCTTATCTGGGTTCACAAACATGTTGACAGCAATCGATGCAAGATTGCA 516518 Query 62963 CACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 63022 || || | |||| | | ||||| || || || || ||||| || || || || Sbjct 516519 AACCGCGATTTCATCGGGGCTGGAATATTCTACAATTTCGGTACAAAGGTTGCTGCATTT 516578 Query 63023 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63082 |||||||| | ||| || ||||| || ||||| ||| ||||| || ||| | Sbjct 516579 AATAGTTCCAACATTCTGCTGATTGGATTTGCGATTACAGTGATCTTTATACAGCATGTA 516638 Query 63083 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63126 || || || || |||| ||| || | |||||| ||| ||||| Sbjct 516639 AGGTGTTCCGGTCTCAACCTGTGAGTTTATAATGGCTAACCAGA 516682 >seq142 Length=137952 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || || | |||||||||||| || |||||||| || || ||||| || || ||||| ||| Sbjct 56793 TTTGAGAGATCCACTTCTTCAACAGTCCAAAAAGAAGCTTCTGCTTTCTTGTACATTTTC 56734 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || ||||| | ||||||||||||||||||| || | |||||||| Sbjct 56733 CAAATGTCTGGCCATTGGATTGGGAAAATAACGAAGCGTCTTGGATTT 56686 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 |||||||| ||| | ||| || || || || || ||||| || || || || || Sbjct 57450 TCGTCTCTGGAAATGAGTTCATTGCTGAAAGTTAGCCCAGGCATAAGTCCGCGTTTCTTC 57391 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||| ||||||| ||| || ||| || ||||||||||||||||| |||||||| Sbjct 57390 AGCCAGAATATGGCAGCAAAACTACCGCTGAAAAAGATTCCTTCTACTGCTGCAAAGGCC 57331 Query 33726 ATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCC 33782 | | || ||||||| || || || ||||| ||||| ||| ||||| | || Sbjct 57330 ACGACTCGCTCTCCAAAATTTGCACTATCATGATTGATCCAATTTATTGCCCAGTTAGCT 57271 Query 33783 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33828 || ||| |||||||| | | || |||||||| || | | ||| Sbjct 57270 TTTTTTGCGACACAAGGTAGGTTCTCGATGGCATTGAACAAAAAGT 57225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813490440160