Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 >seq2 Length=4278185 Score = 104 bits (114), Expect = 2e-17 Identities = 211/310 (68%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 37045 TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTA 37104 || ||||| || || | | | |||| ||| || || || | || ||| | || ||| Sbjct 515684 TGTATAGATCCGTTGTTTGCAATAATTTCATTTTTCATTTCTTCATCCCAGAGATCTCTT 515743 Query 37105 CTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTT 37164 | | || ||| | | | ||||| || | | ||| || || ||||| | || | Sbjct 515744 GCTGTGAGATCTGTTAGCAAATGTGGGTTCATGATCTGGAATTCGCCAGAGAGGACACGC 515803 Query 37165 CTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGAT 37224 |||||||| | |||||| || || | || || || ||||| |||| | ||||| | | Sbjct 515804 CTTGTATAGACATTGCTGGTGTAAGCCTCGATCGATTCATTGTTACCCAGAATTTGCGCT 515863 Query 37225 GTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATT 37284 ||||| ||||| ||||||||||| || || | |||| | ||||||| || ||| Sbjct 515864 GTAGAGGCAGTTGGCATTGGTGCAATAAGTAAAGAGTTTCGGATTCCATGTTTAGCTATT 515923 Query 37285 CTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GT-TCTTTAACCACATATCAT 37342 | |||||| | ||| ||||| | |||||| || || | || ||||||||||| Sbjct 515924 TTAGCCTTTAGTGCTGCCCAGTCCCAAAGATCTGTCGGCGTAACGTT--CCACATATCAT 515981 Query 37343 ATTGTAGAAT 37352 |||||||||| Sbjct 515982 ATTGTAGAAT 515991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468521742875680