Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 159 5e-34 seq142 95.1 2e-14 >seq2 Length=4278185 Score = 159 bits (176), Expect = 5e-34 Identities = 169/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 66473 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 66532 ||| || |||||||| ||||| ||||||| || | ||||||||| |||||||||||| Sbjct 517526 GGTGGGGGAAGCGTGAGTAAAATATTTTTCTGACAATAGATTGTAAGTCTCAATAGCTTT 517585 Query 66533 GTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 66590 ||| |||| ||| | |||||| || |||||||| |||||||| | ||||| |||||| Sbjct 517586 GTCGATAT--CATCGCCATGAATACCAACTGCGACGCGCATTAATAAATGCTGCGGTCTT 517643 Query 66591 TCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 66650 ||||| | ||| || ||||||| |||||| | |||| ||||| || |||||| Sbjct 517644 TCAACCACTTTGCCATTAATTTTCAGCAAGTAACTTCGCTCCAGGGTTTTGAATCCAAAA 517703 Query 66651 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 ||||| || |||||||| || |||||||| | ||||| Sbjct 517704 TAGTTATAGTTGAAGTCTCGATCATAAATAATGGCAGAGTT 517744 Score = 143 bits (158), Expect = 4e-29 Identities = 240/344 (70%), Gaps = 5/344 (1%) Strand=Plus/Plus Query 65580 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 65639 ||||||||||||||||||||| |||| || |||| ||||||||||| ||||| || || Sbjct 516340 ATACCGATAGGTCTATGTCTCATATTGGATCTTTCGGCTTCTGGAATTGGATAGTAGTTG 516399 Query 65640 ATATCTATAATTTTATT-GAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAG 65698 ||||| || ||||| || || | | || ||| | |||| ||| || || ||||| Sbjct 516400 ATATCGATGATTTTGTTCAAGTTATATG-CAACAATTTTGGTCACTTCTTTTAGTTTTTT 516458 Query 65699 AAAATCAAATCGCTCATCT---ATTACAAACATGTTCAATGCAACAGATGCCAGATTACA 65755 |||| | || |||| | ||||||||||| | |||| ||||| ||||| || Sbjct 516459 GAAATTGTAGGTCTTATCTGGGTTCACAAACATGTTGACAGCAATCGATGCAAGATTGCA 516518 Query 65756 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 65815 ||| || | |||| | | ||||| || || || || ||||| || || || || Sbjct 516519 AACCGCGATTTCATCGGGGCTGGAATATTCTACAATTTCGGTACAAAGGTTGCTGCATTT 516578 Query 65816 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 65875 || ||||| | ||| || ||||| || ||||| ||| ||||| || ||| | Sbjct 516579 AATAGTTCCAACATTCTGCTGATTGGATTTGCGATTACAGTGATCTTTATACAGCATGTA 516638 Query 65876 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 || || || || |||| ||| || | |||||| ||| ||||| Sbjct 516639 AGGTGTTCCGGTCTCAACCTGTGAGTTTATAATGGCTAACCAGA 516682 >seq142 Length=137952 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 |||||||| ||| | ||| ||| || || || || ||||| || || || || || Sbjct 57450 TCGTCTCTGGAAATGAGTTCATTGCTGAAAGTTAGCCCAGGCATAAGTCCGCGTTTCTTC 57391 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 ||||| ||||||| ||||| || || || |||||||||||||| |||||||| Sbjct 57390 AGCCAGAATATGGCAGCAAAACTACCGCTGAAAAAGATTCCTTCTACTGCTGCAAAGGCC 57331 Query 36302 ATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGGCC 36358 | | || ||||||| || ||||| ||||| ||||| ||| ||||| | || Sbjct 57330 ACGACTCGCTCTCCAAAATTTGCACTATCATGATTGATCCAATTTATTGCCCAGTTAGCT 57271 Query 36359 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 36404 || ||| |||||||| | |||| || ||||| || | | ||| Sbjct 57270 TTTTTTGCGACACAAGGTAGGTTCTCGATGGCATTGAACAAAAAGT 57225 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 || || | |||||||||||| || |||||||| || || ||||| || || ||||| ||| Sbjct 56793 TTTGAGAGATCCACTTCTTCAACAGTCCAAAAAGAAGCTTCTGCTTTCTTGTACATTTTC 56734 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTTTTGCAAGGATT 36763 || ||||| | |||| ||||| |||||||| || | || |||||| | || | | Sbjct 56733 CAAATGTCTGGCCATTGGATTGGGAAAATAACGAAGCGTCTTGGATTTTCTCTCAGCAAT 56674 Query 36764 GGTTC 36768 ||||| Sbjct 56673 GGTTC 56669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168505422480