Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 163 4e-35 seq142 111 2e-19 >seq2 Length=4278185 Score = 163 bits (180), Expect = 4e-35 Identities = 170/221 (77%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 80352 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGA 80411 ||| || |||||||| ||||| ||||||| |||| ||||||||| |||||||||||| Sbjct 517526 GGTGGGGGAAGCGTGAGTAAAATATTTTTCTGACAATAGATTGTAAGTCTCAATAGCTTT 517585 Query 80412 TTCTATATCCCATTG--ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTT 80469 || |||| ||| | |||||| || || ||||| |||||||| | ||||| |||||| Sbjct 517586 GTCGATAT--CATCGCCATGAATACCAACTGCGACGCGCATTAATAAATGCTGCGGTCTT 517643 Query 80470 TCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAA 80529 ||||| | ||| ||| ||||||| ||||||| | |||| ||||| || |||||| Sbjct 517644 TCAACCACTTTGCCATTAATTTTCAGCAAGTAACTTCGCTCCAGGGTTTTGAATCCAAAA 517703 Query 80530 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570 ||||| || |||||||| || |||||||| | ||||| Sbjct 517704 TAGTTATAGTTGAAGTCTCGATCATAAATAATGGCAGAGTT 517744 Score = 138 bits (152), Expect = 2e-27 Identities = 239/344 (69%), Gaps = 5/344 (1%) Strand=Plus/Plus Query 79459 ATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTA 79518 ||||||||||||||||||||| |||| || |||| ||||||||||| ||||| || || Sbjct 516340 ATACCGATAGGTCTATGTCTCATATTGGATCTTTCGGCTTCTGGAATTGGATAGTAGTTG 516399 Query 79519 ATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGA 79578 ||||| || ||||| || | || | | | |||| ||| || |||||||| Sbjct 516400 ATATCGATGATTTTGTTCAAGTTATATGCAACAATTTTGGTCACTTCTTTTAGTTTTTTG 516459 Query 79579 AAATCAAATCGTC-CATCT---ATTACAAACATGTTCAACGCGACAGATGCCAGATTACA 79634 |||| | ||| |||| | ||||||||||| | || | ||||| ||||| || Sbjct 516460 AAATTGTA-GGTCTTATCTGGGTTCACAAACATGTTGACAGCAATCGATGCAAGATTGCA 516518 Query 79635 AACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTT 79694 ||| || | |||| | | ||||| || ||||| || || ||||| || || || Sbjct 516519 AACCGCGATTTCATCGGGGCTGGAATATTCTACAATTTCGGTACAAAGGTTGCTGCATTT 516578 Query 79695 AATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 79754 ||| ||||| | ||| || ||||| || ||||| ||| ||||| || ||| | Sbjct 516579 AATAGTTCCAACATTCTGCTGATTGGATTTGCGATTACAGTGATCTTTATACAGCATGTA 516638 Query 79755 CGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 79798 || || || || |||| ||| || | |||||| ||| ||||| Sbjct 516639 AGGTGTTCCGGTCTCAACCTGTGAGTTTATAATGGCTAACCAGA 516682 Score = 123 bits (136), Expect = 4e-23 Identities = 215/310 (69%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||| || ||||| | ||| ||||| ||| || || ||||||| ||| | | ||| Sbjct 515683 CTGTATAGATCCGTTGTTTGCAATAATTTCATTTTTCATTTCTTCATCCCAGAGATCTCT 515742 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 | || | | || | || | ||| || || | | || ||||| ||||| | || | Sbjct 515743 TGCTGTGAGATCTGTTAGCAAATGTGGGTTCATGATCTGGAATTCGCCAGAGAGGACACG 515802 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || || || | ||| ||||| || | || | ||||||||| || |||| |||||| || Sbjct 515803 CCTTGTATAGACATTGCTGGTGTAAGCCTCGATCGATTCATTGTTACCCAGAATTTGCGC 515862 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATG-ATCTGA 79204 || || || |||||||| ||||| | | |||| |||| | || | | | || | Sbjct 515863 TGTAGAGGCAGTTGGCATTGGTGCAATAAGTAAAGAGTTTCGGATTCCATGTTTAGCT-A 515921 Query 79205 TTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264 ||||| | ||||| | | |||| ||||||||||| | ||| ||| ||||| | ||||| Sbjct 515922 TTTTAGCCTTTAGTGCTGCCCAGTCCCAAAGATCTGTCGGCGTAACGTTCCACATATCAT 515981 Query 79265 ATTGTAGAAT 79274 |||||||||| Sbjct 515982 ATTGTAGAAT 515991 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || ||| ||||||||| || ||||| |||| ||||||||| || ||||| ||||| || Sbjct 516109 TAAGTTGGATAAGGTCCATCTTTTTCAGCTATTTCACAACTAGCTTCTAACGCTCCATAG 516168 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATA 79418 |||| ||||| ||||| | ||||| | ||| |||||| || ||||||||||| Sbjct 516169 TAAAGTGTTTCAAAAATGGCAATGTTGAGCTTTTGGGCTTCTTCACTTTCAAATGGATA 516227 >seq142 Length=137952 Score = 111 bits (122), Expect = 2e-19 Identities = 164/228 (72%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 |||||||| ||| ||||| ||| || || || || ||||| || || || || || Sbjct 57450 TCGTCTCTGGAAATGAGTTCATTGCTGAAAGTTAGCCCAGGCATAAGTCCGCGTTTCTTC 57391 Query 50044 AGCCAAAATATGGACGCAAATG-ACC-CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 ||||| ||||||| ||||| ||| | ||||| |||||||||||||||| ||||||| Sbjct 57390 AGCCAGAATATGGCAGCAAAACTACCGCTGAAAA--AGATTCCTTCTACTGCTGCAAAGG 57333 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 50158 | || | || ||||||| || | || || ||||| ||||| ||| ||||| | | Sbjct 57332 CCACGACTCGCTCTCCAAAATTTGCACTATCATGATTGATCCAATTTATTGCCCAGTTAG 57273 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206 | || ||| |||||||| | | || |||||||| || | | ||| Sbjct 57272 CTTTTTTTGCGACACAAGGTAGGTTCTCGATGGCATTGAACAAAAAGT 57225 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || || | ||| |||||||| || |||||||| || || ||||| || || ||||| ||| Sbjct 56793 TTTGAGAGATCCACTTCTTCAACAGTCCAAAAAGAAGCTTCTGCTTTCTTGTACATTTTC 56734 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || ||||| | ||||||||||||||||||| || | |||||||| Sbjct 56733 CAAATGTCTGGCCATTGGATTGGGAAAATAACGAAGCGTCTTGGATTT 56686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264113296080