Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 156 6e-33 seq142 91.5 2e-13 >seq2 Length=4278185 Score = 156 bits (172), Expect = 6e-33 Identities = 163/212 (77%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 72435 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGA 72494 ||| || |||||||| ||||| ||||||| |||| ||||||||| |||||||||||| Sbjct 517526 GGTGGGGGAAGCGTGAGTAAAATATTTTTCTGACAATAGATTGTAAGTCTCAATAGCTTT 517585 Query 72495 TTCTATATCCCATTG--ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTT 72552 || |||| ||| | ||| || || || ||||| |||||||| | |||||| |||||| Sbjct 517586 GTCGATAT--CATCGCCATGAATACCAACTGCGACGCGCATTAATAAATGCTGCGGTCTT 517643 Query 72553 TCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 72612 ||||| | ||| ||| ||||||| |||||| | |||| ||||| || |||||| Sbjct 517644 TCAACCACTTTGCCATTAATTTTCAGCAAGTAACTTCGCTCCAGGGTTTTGAATCCAAAA 517703 Query 72613 TAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| || |||||||| || |||||||| Sbjct 517704 TAGTTATAGTTGAAGTCTCGATCATAAATAAT 517735 Score = 143 bits (158), Expect = 4e-29 Identities = 240/344 (70%), Gaps = 5/344 (1%) Strand=Plus/Plus Query 71542 ATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTA 71601 |||||||||||||| |||||| |||| || |||| ||||||||||| ||||| || || Sbjct 516340 ATACCGATAGGTCTATGTCTCATATTGGATCTTTCGGCTTCTGGAATTGGATAGTAGTTG 516399 Query 71602 ATATCTATAATTTTATT-GAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAG 71660 ||||| || ||||| || || | | || | | | |||| ||| || |||||||| Sbjct 516400 ATATCGATGATTTTGTTCAAGTTATATG-CAACAATTTTGGTCACTTCTTTTAGTTTTTT 516458 Query 71661 AAAATCAAATCTCCCATCT---ATTACAAACACGTTCAAGGCAACAGATGCCAGATTACA 71717 |||| | || |||| | ||||||| ||| | |||| ||||| ||||| || Sbjct 516459 GAAATTGTAGGTCTTATCTGGGTTCACAAACATGTTGACAGCAATCGATGCAAGATTGCA 516518 Query 71718 AACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTT 71777 ||| || | |||| | || ||||| || |||||| || ||||| || || || || Sbjct 516519 AACCGCGATTTCATCGGGGCTGGAATATTCTACAATTTCGGTACAAAGGTTGCTGCATTT 516578 Query 71778 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAA 71837 || ||||| | ||| || ||||| || ||||| ||| ||||| || || | Sbjct 516579 AATAGTTCCAACATTCTGCTGATTGGATTTGCGATTACAGTGATCTTTATACAGCATGTA 516638 Query 71838 CGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 71881 || || || || |||| ||| || | |||||| ||| ||||| Sbjct 516639 AGGTGTTCCGGTCTCAACCTGTGAGTTTATAATGGCTAACCAGA 516682 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 71392 TATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTT 71451 || ||||| |||||||| |||| ||||||||| || ||||| |||||||| |||| ||| Sbjct 516118 TAAGGTCCATCTTTTTCAGCTATTTCACAACTAGCTTCTAACGCTCCATAGTAAAGTGTT 516177 Query 71452 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA 71511 || ||||| | ||||| | ||| ||||| || ||||||||||| | | | Sbjct 516178 TCAAAAATGGCAATGTTGAGCTTTTGGGCTTCTTCACTTTCAAATGGATACCGCATTAAA 516237 Query 71512 ATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 | || || || ||||| || |||| ||| || || Sbjct 516238 AGGAAGGCATCCGCTAACCCCTGAATGCCTATCCC 516272 >seq142 Length=137952 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 || ||||| ||| | ||| ||| || || || || ||||| || || || || || Sbjct 57450 TCGTCTCTGGAAATGAGTTCATTGCTGAAAGTTAGCCCAGGCATAAGTCCGCGTTTCTTC 57391 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||| ||||| | ||||| || || ||||||||||||||||| |||||||| Sbjct 57390 AGCCAGAATATGGCAGCAAAACTACCGCTGAAAAAGATTCCTTCTACTGCTGCAAAGGCC 57331 Query 42209 ATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGGCC 42265 | | || ||||||| || ||||| ||||| ||||| ||| ||||| | || Sbjct 57330 ACGACTCGCTCTCCAAAATTTGCACTATCATGATTGATCCAATTTATTGCCCAGTTAGCT 57271 Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 42311 || ||| |||||||| | | || |||||||| || | | ||| Sbjct 57270 TTTTTTGCGACACAAGGTAGGTTCTCGATGGCATTGAACAAAAAGT 57225 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || || | ||| |||||||| || |||||||| || |||||||| || || ||||| ||| Sbjct 56793 TTTGAGAGATCCACTTCTTCAACAGTCCAAAAAGAAGCTTCTGCTTTCTTGTACATTTTC 56734 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 || || || | |||| |||||||||||||| || | |||||||| Sbjct 56733 CAAATGTCTGGCCATTGGATTGGGAAAATAACGAAGCGTCTTGGATTT 56686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134820816720