Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq223 125 7e-24 seq2 84.2 2e-11 >seq223 Length=3708094 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| || || | |||||||| ||||| |||||||| ||| | Sbjct 239385 CCACCACGTAGACGAAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 239326 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || | ||||||||| ||| |||| ||||| || ||||| || || Sbjct 239325 AAGGTACGGCCATCCTCCAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGG 239266 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| || | | ||| | || || | || ||| ||| Sbjct 239265 ATTCCTTCTTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGACT 239206 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| |||||||| || ||||||||||||||||| Sbjct 239205 TCCAAGGTAATTGTCTTTCCGGTCAAGGTCTTTACGAATATTTGCAT 239159 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | || | ||| || || | || ||||| || || || ||||| || Sbjct 239158 GCCTCCACGAAGTCGAAGAACCAAGTGCAGCGTGGATTCCTTCTGAATATTGTAGTCCGA 239099 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| || || || ||||| || ||| |||| ||||| |||||||| || || Sbjct 239098 CAACGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATAAGACGCTGCTGATCTGGCGG 239039 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| |||||| ||| | | ||| | |||||| | || ||||| Sbjct 239038 GATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCGATCGTGTCAGAGGCCTCTAC 238979 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | || ||||| |||||||| || ||||| || ||||| Sbjct 238978 TTCCAGAGTAATAGTTTTGCCCGTCAATGTCTTAACGAAGATCTGCAT 238931 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||||||||| | || ||||| ||||| |||||||||||| | Sbjct 239841 CCCCCACGGAGACGGAGAACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGAC 239782 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| | ||||| |||||||| |||||| | |||| | ||||| || || || Sbjct 239781 AAGGTGCGCCCATCTTCTAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGA 239722 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||| ||| || | | ||| | ||||| | || ||| ||| Sbjct 239721 ATTCCCTCTTTGTCTTGAATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACT 239662 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | ||||| ||||| || || || || || || |||||| || Sbjct 239661 TCCAAGGTGATAGTCTTACCGGTTAAAGTCTTCACAAAAATCTGCATACCT 239611 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | |||| ||| ||||| | || |||||||| || |||||||| ||| | Sbjct 241640 CCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAC 241581 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || || ||||| || ||| |||| ||||| || || || || || Sbjct 241580 AGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGA 241521 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||| | | ||| | ||||||| | ||| ||| Sbjct 241520 ATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAACT 241461 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| || | ||||| ||||| ||||||||| Sbjct 241460 TCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCATA 241413 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| |||||||| ||||| || ||||| ||| | Sbjct 240069 CCCCCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGAC 240010 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | |||||||| ||| |||||| | ||| ||||| || || Sbjct 240009 AAGGTGCGACCATCTTCCAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGA 239950 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||| | | ||| | ||||| | || || ||| Sbjct 239949 ATTCCTTCTTTGTCCTGGATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACT 239890 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || || || ||||| || || ||||||||| Sbjct 239889 TCCAAGGTGATGGTCTTACCAGTTAACGTTTTCACAAAAATTTGCATA 239842 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||||| || |||||||| || |||||||| || Sbjct 238929 CCACCGCGGAGACGGAGGACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAA 238870 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||| || || ||| ||||||| | ||||| || || || Sbjct 238869 AGGGTGCGGCCATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGG 238810 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || || || | | ||| | ||| || | | ||| || Sbjct 238809 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGACA 238750 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||||||||| || |||||||| || ||||| Sbjct 238749 TCGAGAGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 >seq2 Length=4278185 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 157049 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACT 157108 ||||| |||||||| || ||||| || || || |||| ||||| | |||||| ||| Sbjct 516493 TTGACAGCAATCGATGCAAGATTGCAAACCGCGATTTCATCGGGGCTGGAATATTCTACA 516552 Query 157109 ATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGG 157168 ||||| | ||| | ||||||||||| || ||| ||| |||||| |||||| Sbjct 516553 ATTTCGGTACAAAGGTTGCTGCATTTAATAGTTCCAACATTCTGCTGATTGGATTTGCGA 516612 Query 157169 TTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTC 157209 || || || || || | |||||| ||||| ||||| || Sbjct 516613 TTACAGTGATCTTTATACAGCATGTAAGGTGTTCCGGTCTC 516653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507011091731040