Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq224 107 3e-18 seq142 89.7 8e-13 seq2 84.2 3e-11 >seq224 Length=2490458 Score = 107 bits (118), Expect = 3e-18 Identities = 244/366 (67%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 126715 TCTTTGACACCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGA 126774 || |||| ||| || || || | || ||||| || || |||||||| || || | ||| Sbjct 135182 TCCTTGAGACCCCGTGTGGTTAAAGCTGGAGTTCCAAGCCTGATGCCACTAGGGTTAAGA 135241 Query 126775 GCGCTCTTGTCTCCGGGTACTGTGTTTTTGTTGCAAGCGATTCTGCACAGTTCGAGGATG 126834 || || ||||||||||| |||||||| ||||| ||||| || | ||| | || Sbjct 135242 GCACTTTTGTCTCCGGGAACTGTGTTCTTGTTACAAGCTATGGAGATATCTTCTAACATT 135301 Query 126835 CGCTCTGCCGGTGCTCCTGCGAGTCCCACACTGCGCAAATCCACTAGAATCAGATGCACA 126894 | |||||| |||||| | ||| | | | |||||| |||| ||| | ||| || Sbjct 135302 CTCTCTGCTTTTGCTCCACTAATTCCGGTAGTTCTCAAATCAACTAAAATTAAATGTACG 135361 Query 126895 TCGGTACCGCCAGTGGTGACGGTGTAGCCTCGTGAAACGAGTCCCTCTGCCAACAACTGT 126954 || || || || ||| ||| |||| || || || || | | ||| |||| Sbjct 135362 TCTGTGCCCCCTGTGCTGATTTTGTACCCAAGTTTTTGAAGACCAGCAGACAATCTCTGT 135421 Query 126955 GCATTTCGCACCACTCGTCTTTGGTAGAGTGCAA---ACTCTAGAGTGGTGGCCTGGTGC 127011 ||||| |||||| | |||| || | ||| |||| | | | | || | | Sbjct 135422 GCATTAGCTACCACTTGCTTTTGATA---TCCAATATACTCAGGGGATTTAACTTGCTTC 135478 Query 127012 ATTGCGGTGGCGATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAAC 127071 || | || || || || || |||| ||||| |||||||||||||| || |||||||| Sbjct 135479 ATCGTTGTCGCAATAGCAGCGATCGCATGATTATGCGGTCCACCTTGTAGCCCAGGAAAA 135538 Query 127072 ACGGCT 127077 || ||| Sbjct 135539 ACAGCT 135544 >seq142 Length=137952 Score = 89.7 bits (98), Expect = 8e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 125120 TGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAA 125179 ||||||| | ||||||||||| |||||||||||||||| | || |||||||| ||||| Sbjct 56923 TGAGCGACACTTTATATCGCATGTTTTGGCCTTCTTTGCAGCATCTGATGGAATTGTCAA 56982 Query 125180 CGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTT 125238 ||| ||||| || || ||||| ||| || | || | | || | || |||| Sbjct 56983 CGAGAATCTCGTCGA-GCGATTTAGTCAGGAAGTTACTGTAACGGAAGCACGATGTTTTT 57041 Query 125239 ACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTC 125284 | || |||||||| || || ||||| || || || |||||||| Sbjct 57042 ATGGTTTCCAAATAGCCATGGAAAACGTCCATTCCGAGATGTACTC 57087 >seq2 Length=4278185 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865 ||| ||||| | | |||||||| ||||| ||||| | | |||||| | || | Sbjct 517274 AACTAACGGAGATTCTAGTGGCCTGGTGCCCATGCTACGTGTATACAATAATACAGCAAG 517215 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||||| ||||| |||||||||||||| || ||| | ||| | || || ||||| || Sbjct 517214 ATACGTTGACCAGGGTGGCAATAAACGGCCCGGTGCTTTTGCCATATATTTAGAACCCTG 517155 Query 96926 GCACGCGGACGTTTTTGACTT 96946 ||| || || ||||| || || Sbjct 517154 GCATGCAGATGTTTTCGAGTT 517134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054364588720