Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq223 136 3e-27 seq496 86.0 5e-12 >seq223 Length=3708094 Score = 136 bits (150), Expect = 3e-27 Identities = 159/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||||||||| | |||||| || ||||| |||||||||||| | | | | | ||||| Sbjct 239824 AACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTC 239765 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || |||||||||||| | ||||| | || ||||| ||||||||| |||||||| Sbjct 239764 TAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTG 239705 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| ||||| ||| ||| |||| ||||| ||| ||| || || ||||| || || | Sbjct 239704 AATCTTTGC-CTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCT 239646 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || | ||| || |||||||| |||||| Sbjct 239645 TACCGGTTAAAGTCTTCACAAAAATCTGCATA 239614 Score = 113 bits (124), Expect = 3e-20 Identities = 156/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| ||||| || ||||| || |||||||| ||| || | | | || || Sbjct 241623 AACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTC 241564 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||||| || | || | ||| |||||||| ||||||||||||||||| Sbjct 241563 CAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGAATTCCTTCTTTGTCCTG 241504 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| || ||| |||| ||||| || | || ||| || || | ||| |||||| Sbjct 241503 AATTTTAGCT-TTCACATTTTCAATGGTGTC-CGATGCTTCAACTTCCAGGGTGATGGTT 241446 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || ||||| || || ||||||||| Sbjct 241445 TTGCCAGTTAGGGTTTTGACGAAGATTTGCATA 241413 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 |||||||||||| || || || || || || ||||| || | | | | ||||| Sbjct 239596 AACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCTTC 239537 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || |||||||| ||| | || || | ||||||||| || || |||||||| || Sbjct 239536 CAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGGATGCCTTCTTTATCCTG 239477 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| ||||| ||| || |||| ||||| ||| || || || ||||| || |||| Sbjct 239476 AATCTTTGC-CTTAACGTTTTCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATTGTTT 239418 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || |||||||| |||||||||||||| Sbjct 239417 TACCGGTAAGAGTTTTGACAAAAATTTGCAT 239387 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 || ||| ||||| | |||||| || || || ||||| || ||| | | | | || Sbjct 240283 TAGAACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATC 240224 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| || ||||| || ||| | || || | ||||||||| || ||||||||||| || Sbjct 240223 TTCCAACTGTTTACCCGCGAAGATTAATCTTTGTTGGTCTGGGGGGATTCCTTCTTTATC 240164 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| ||| | || ||||| || | ||| || || ||||| ||||| Sbjct 240163 CTGAATCTTCGCCTTCACATTCTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATGGT 240104 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || | |||||| ||||||||||||||| Sbjct 240103 CTTACCAGTTAAAGTTTTCACAAAAATTTGCATA 240070 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || ||| | || | ||| || ||||| || || || |||||||| || Sbjct 241412 CCACCTCGCAGTCTGAGGACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGAC 241353 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| ||||| || || ||| | ||||| | ||| ||||| ||| Sbjct 241352 AAGGTACGCCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGG 241293 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| || ||||| || |||||| || || | || ||||| ||| ||| || Sbjct 241292 ATTCCCTCCTTGTCCTGGATCTTTGCT-TTCACGTTCTCGATGGTGTCGGATGCTTCAAC 241234 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||||||||| |||| ||| ||||| || |||||||| Sbjct 241233 CTCCAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 241186 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || || || || ||||| |||||||| ||| | | | | || || Sbjct 239368 AACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTC 239309 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| || || | || | ||| ||||| || ||| |||||||||||||| Sbjct 239308 CAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCTTTGTCCTG 239249 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| ||| |||| || |||||| ||| || || |||||||| || || Sbjct 239248 AATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGACTTCCAAGGTAATTGTCTT 239189 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || ||||| || |||||||| Sbjct 239188 TCCGGTCAAGGTCTTTACGAATATTTGCAT 239159 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| || || || ||||| || ||||| ||| | | | | ||||| Sbjct 240052 AACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCTTC 239993 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || ||||| || || | ||||| | |||||| || ||||||||||||||||| Sbjct 239992 CAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTG 239933 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||||| ||| || || |||| ||||| ||| || || || ||||| ||||| | Sbjct 239932 GATTTTTGCT-TTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCT 239874 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || | ||||| ||||||||||||||| Sbjct 239873 TACCAGTTAACGTTTTCACAAAAATTTGCATA 239842 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||||||||| ||||| || |||||||| || || | | | ||||| Sbjct 238911 ACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCC 238852 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || || || | |||| | || ||||| ||| ||||| || ||||| Sbjct 238851 AATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 238792 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| |||| || |||||| | ||| ||||| | || ||||| || Sbjct 238791 ATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGACATCGAGAGTGATGGTCTTG 238732 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||| ||||| || || ||||| Sbjct 238731 CCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || ||||| || || ||||| || || || ||| | | | | ||||| Sbjct 240939 AACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGACAAGGTGCGACCATCTTC 240880 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || || || ||| | || || || |||||||| |||||| || |||||||| Sbjct 240879 CAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCCTG 240820 Query 15274 AATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || || | |||| || | || ||||| ||| ||| || || | ||| ||||||| Sbjct 240819 GATCTT-CGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTTT 240761 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| |||| |||||| |||||||| |||||| Sbjct 240760 TACCGGTCAAAGTTTTGACAAAAATCTGCATA 240729 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || ||||| |||||||| || || | | ||||||| Sbjct 238683 ACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTCC 238624 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || || | ||||| | || || || || ||||| |||||||| Sbjct 238623 AATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGG 238564 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| || | || ||||| ||| | || || || | ||| || ||||| Sbjct 238563 ATCTTTGC-CTTGACGTTCTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATCGTTTT 238505 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT-ATTT 15367 || || || ||||| ||||| || ||||| |||| Sbjct 238504 CCCCGTGAGGGTTTTCACAAAGATCTGCATGATTT 238470 >seq496 Length=1672140 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||||| |||||| ||||| | ||||| | || || || |||||||||||| ||| Sbjct 1564632 TCTTCTAGTTGTTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGAATTCCTTCCTTG 1564573 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || || || ||| ||| |||| || |||||| | || || || | ||| ||| Sbjct 1564572 TCCTGGATCTTAGCCTTGACATTTTCAATAGTATCGGAAGCCTCCACCTCAAGGGTGATG 1564513 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||||| || || || || || ||||| Sbjct 1564512 GTTTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 1564478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362176895861202