Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq223 100 2e-16 >seq223 Length=3708094 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 || ||||| | || || || || || |||||||| |||||||| || | || ||| Sbjct 239595 ACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCTTCC 239536 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 || || || || || ||||| | ||| ||||| | ||| ||||||||||| || | Sbjct 239535 AACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGGATGCCTTCTTTATCCTGA 239476 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| |||| | || ||| ||| |||||| || | || |||| || || ||| Sbjct 239475 ATCTTTGCCT---TAACGTTTTCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATTGTT 239419 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||||||||| || ||||||||||| Sbjct 239418 TTACCGGTAAGAGTTTTGACAAAAATTTGCAT 239387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318775571976756