Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq223 86.0 4e-12 >seq223 Length=3708094 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || || ||||| || || || ||| || ||| |||| ||| Sbjct 239367 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCC 239308 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| || | || || || || | || | |||||||| || | Sbjct 239307 AATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCTTTGTCCTGA 239248 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | ||| |||||| | | || || || | |||||||| || Sbjct 239247 ATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGACTTCCAAGGTAATTGTCTTT 239188 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| || ||||| || |||||||||||| Sbjct 239187 CCGGTCAAGGTCTTTACGAATATTTGCATG 239158 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || |||||||||||||||||||| ||||||| ||||| ||| |||| | || ||||| Sbjct 238629 TCTTCCAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAGGGATTCCCTCTTTG 238570 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 || || ||| ||||| | ||| || || | | ||| || |||| || || Sbjct 238569 TCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATC 238510 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| || || | || |||||||| || |||||| Sbjct 238509 GTTTTCCCCGTGAGGGTTTTCACAAAGATCTGCATG 238474 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 || ||||| | ||| || |||||||| || |||||| || ||| |||| || Sbjct 239823 ACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTCT 239764 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||| || ||||| ||||| | |||||||| | || | || ||||| ||| | Sbjct 239763 AGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTGA 239704 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| || || | | | || || | | || || || | || || || ||| Sbjct 239703 ATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTTA 239644 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||||||||||||||| || ||||| Sbjct 239643 CCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || || ||||||||||| || ||| || || |||| ||| Sbjct 240051 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCTTCC 239992 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || ||||| || ||||| ||||| | ||| || || | || | |||||||| || Sbjct 239991 AACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGG 239932 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 |||||| |||||| | | | || || | | ||| || || | || || || ||| Sbjct 239931 ATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTTA 239872 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || |||||||| |||||||| Sbjct 239871 CCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354775342949256