Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq223 107 2e-18 >seq223 Length=3708094 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || |||||||| ||||| |||||||| ||| || || ||| ||| Sbjct 239367 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCC 239308 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || ||| | ||||| | ||||||||| || | ||||||||||| | Sbjct 239307 AATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCTTTGTCCTGA 239248 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| || |||| | ||| ||||| |||||| || || Sbjct 239247 ATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGACTTCCAAGGTAATTGTCTTT 239188 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||| || || || || |||||||| Sbjct 239187 CCGGTCAAGGTCTTTACGAATATTTGCAT 239159 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | || || |||||||| || || |||||||| || |||||||| ||| | Sbjct 241640 CCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAC 241581 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | ||| |||| |||||||| ||| | || || | |||||| || || Sbjct 241580 AGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGA 241521 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| |||||| |||||| | ||| | || | ||| | Sbjct 241520 ATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAACT 241461 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||||||||| || | |||||||| || |||||||| Sbjct 241460 TCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || |||||||| ||||| || ||||| ||| || || | ||||||| Sbjct 240051 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCTTCC 239992 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 || ||||| || ||| | || | || |||||||| ||| | ||||||||||| Sbjct 239991 AACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGG 239932 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 |||||| ||| || | | | | ||| | || ||||| ||| ||||| || Sbjct 239931 ATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTTA 239872 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || |||||||| |||||||||||||| Sbjct 239871 CCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || ||||| || |||||||| || || || ||||| || || || | ||||||| Sbjct 239595 ACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCTTCC 239536 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 || |||||||| || |||| | || ||||| || ||| | ||||||||| || | Sbjct 239535 AACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGGATGCCTTCTTTATCCTGA 239476 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||| || || | ||| | ||| | || ||||| ||| || ||||| Sbjct 239475 ATCTTTGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATTGTTTTA 239416 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| | ||||||||||||||||||||| Sbjct 239415 CCGGTAAGAGTTTTGACAAAAATTTGCATT 239386 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || |||||||| ||||| || || || ||| || || | ||||||| Sbjct 240938 ACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGACAAGGTGCGACCATCTTCC 240879 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 || || || || || |||| | | |||||| || || | || |||||||| Sbjct 240878 AACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCCTGG 240819 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || |||||| | ||| | ||| | ||| ||||| ||| |||||||| Sbjct 240818 ATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTTTTA 240759 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||| |||||||||||||| ||||| Sbjct 240758 CCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419584530638682