Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq496 159 8e-34 seq223 150 4e-31 seq168 96.9 8e-15 >seq496 Length=1672140 Score = 159 bits (176), Expect = 8e-34 Identities = 148/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| ||||| |||||||| ||||| | ||| |||||||||||||| |||||||| || Sbjct 1564665 TTCTGGATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGATC 1564606 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | ||||| |||||||| || |||||||| || ||||| ||||| || || |||||||| Sbjct 1564605 AATCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTTCA 1564546 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | |||||| || || ||||| || || || || ||||| || || || || || || Sbjct 1564545 ATAGTATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGAAG 1564486 Query 104552 ATCTGCAT 104559 |||||||| Sbjct 1564485 ATCTGCAT 1564478 >seq223 Length=3708094 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| ||| | |||||||| ||||| ||||| |||||||| | || | ||| ||| Sbjct 239598 AGAACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCT 239539 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||||| || || ||||||| || ||||| || || || || |||||||||||| Sbjct 239538 TCCAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGGATGCCTTCTTTATCC 239479 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||||||||| || || ||||| | ||| ||| | || || || | || || || Sbjct 239478 TGAATCTTTGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATTGTT 239419 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| ||||| ||||| ||||| || |||||| Sbjct 239418 TTACCGGTAAGAGTTTTGACAAAAATTTGCATT 239386 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||| | || | || |||| ||| || || ||||| || ||||| || || || Sbjct 239844 ATACCCCCACGGAGACGGAGAACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCG 239785 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || |||||||||||||| ||||||||||| | ||||| || || || Sbjct 239784 GACAAGGTGCGCCCATCTTCTAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGT 239725 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| ||||| || ||||||||||| || |||||||| | ||| ||| | ||| Sbjct 239724 GGAATTCCCTCTTTGTCTTGAATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCG 239665 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || ||||||||||| || | || || ||||| |||||||| Sbjct 239664 ACTTCCAAGGTGATAGTCTTACCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || || ||||| |||||||| |||||||| || | || | ||| ||| Sbjct 240282 AGAACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCT 240223 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||||| || || || |||| || ||||| || || || ||||||||||||||| Sbjct 240222 TCCAACTGTTTACCCGCGAAGATTAATCTTTGTTGGTCTGGGGGGATTCCTTCTTTATCC 240163 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||||| || | ||| || || ||| || || | || || ||| Sbjct 240162 TGAATCTTCGCCTTCACATTCTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATGGTC 240103 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | ||||| ||||| || ||||| Sbjct 240102 TTACCAGTTAAAGTTTTCACAAAAATTTGCAT 240071 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||| |||| || || | ||| | || ||||||||||| || || ||||| || Sbjct 241640 CCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAC 241581 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | ||| || || || ||||| || ||||| || || | |||||| || || || Sbjct 241580 AGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGA 241521 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||||||||| |||||||| || ||||| |||||||| | ||| || | ||| || Sbjct 241520 ATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAACT 241461 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| || ||||| || || || ||||| Sbjct 241460 TCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||||||||| ||||| || | || | ||| || || || ||||| || Sbjct 239127 GTGGATTCCTTCTGAATATTGTAGTCCGACAACGTGCGACCATCCTCCAGCTGTTTGCCG 239068 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| || || ||||||||||| |||||||| || ||||| Sbjct 239067 GCAAAGATAAGACGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATTTTAGCTTTC 239008 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || || | ||||| || || |||||||| || || || | ||| Sbjct 239007 ACATTTTCGATCGTGTCAGAGGCCTCTACTTCCAGAGTAATAGTTTTGCCCGTCAATGTC 238948 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 238947 TTAACGAAGATCTGCATT 238930 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || |||||||| ||||| || | || | ||| ||||| | ||||| || Sbjct 240039 GTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTACCG 239980 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || |||||||| || || ||||||||||| ||||| || |||||||| Sbjct 239979 GCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGGATTTTTGCTTTG 239920 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||| ||| | || || || | || || ||||||||||| | ||| Sbjct 239919 ACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTTACCAGTTAACGTT 239860 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 239859 TTCACAAAAATTTGCAT 239843 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || | ||| | || ||||||||||| || || ||||| Sbjct 238932 ATTCCACCGCGGAGACGGAGGACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCC 238873 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| | ||| ||||| ||||| || || ||||| || || || Sbjct 238872 GAAAGGGTGCGGCCATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGT 238813 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||| ||||| || || |||||||| | |||||| || ||| Sbjct 238812 GGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCG 238753 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || || | || ||||| || |||||||| Sbjct 238752 ACATCGAGAGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||| | ||| || | || | |||||||| || || || || ||||| Sbjct 239388 ATTCCACCACGTAGACGAAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCG 239329 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || || || | |||||| || ||||| || || | ||||||||| || Sbjct 239328 GACAAGGTACGGCCATCCTCCAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGT 239269 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| |||||||| || || || |||||||| | |||||| | ||| Sbjct 239268 GGGATTCCTTCTTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCG 239209 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| ||||| || || | || ||||| ||||| ||||| Sbjct 239208 ACTTCCAAGGTAATTGTCTTTCCGGTCAAGGTCTTTACGAATATTTGCAT 239159 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || |||||||||||||| || | || | ||| ||||| | || || || Sbjct 240926 GTAGATTCCTTTTGAATATTATAGTCGGACAAGGTGCGACCATCTTCCAACTGCTTACCG 240867 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||||| | |||||| || || || || || ||||| ||||| ||||| ||||| Sbjct 240866 GCGAAAATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCCTGGATCTTCGCTTTC 240807 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| | ||| || || || || || || ||||| || | ||| Sbjct 240806 ACGTTCTCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTTTTACCGGTCAAAGTT 240747 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 240746 TTGACAAAAATCTGCAT 240730 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || || || || ||||| | ||| ||||| |||||||| || ||||| Sbjct 241415 ATACCACCTCGCAGTCTGAGGACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCC 241356 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| | ||| ||||| || || || | || || || || || Sbjct 241355 GACAAGGTACGCCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGT 241296 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||| ||||||||||| || || || | ||| ||| | ||| Sbjct 241295 GGGATTCCCTCCTTGTCCTGGATCTTTGCTTTCACGTTCTCGATGGTGTCGGATGCTTCA 241236 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || ||||| || | || ||||| || || ||||| Sbjct 241235 ACCTCCAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 241186 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| | ||| ||||| Sbjct 241154 GTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAATTGCTTTCCG 241095 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || ||||| || || || || ||||| || || ||||| ||||| || || Sbjct 241094 GCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTC 241035 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| | ||| || || || || || || || || || || || Sbjct 241034 ACATTCTCGATAGTATCAGATGCTTCGACTTCCAGGGTGATGGTTTTGCCGGTCAGAGTC 240975 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 240974 TTGACAAAGATTTGCAT 240958 >seq168 Length=1844999 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/203 (72%), Gaps = 10/203 (5%) Strand=Plus/Plus Query 238281 AACAATCCTACATGTGAAGCGTTGAGTAACCTATCACCGTGGTTACATTTCGGTCAT-AT 238339 ||| ||||| | | | || ||||| || ||||||||||||| || || || ||| || Sbjct 1481046 AACGATCCTTTAGGCAATGCTTTGAGCAATTTATCACCGTGGTTCCACTTTGG-CATGAT 1481104 Query 238340 ATCTGCTCAACG-TGTAGTTTTAGAAACATTAAAATATAAGAGTATACATCCTAAATC-- 238396 ||||| ||| || |||| |||| ||| || ||||||||| | | |||| ||||||| Sbjct 1481105 ATCTGTTCAGCGTTGTA-TTTTGGAAGTATCAAAATATAAAAAAACACATACTAAATCGG 1481163 Query 238397 -TGTAAGCGTATTTTTAGACGAAATCATCATAAGACGTGAACTAGCTGATAATTTTTGCT 238455 || |||| ||| | || ||| ||| | ||| | ||||| ||||||||| |||| Sbjct 1481164 TTGAAAGC---TTTATGGAGGAAGCCATTGTCAGAAGAGAACTGAGTGATAATTTCTGCT 1481220 Query 238456 ATTATAATAAAAGATATGATTCT 238478 |||||| || ||||||||| Sbjct 1481221 TTTATAACGAACATTATGATTCT 1481243 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 238578 ACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCAT 238637 ||||| ||| | |||||||||| || || || || ||||| ||| ||||||||| Sbjct 1481431 ACTCATGATGACTTATGGAATTCAGCACAAATTCAGTTGGTACAGGAAGGAAAAATGCAT 1481490 Query 238638 AGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAA 238697 |||| || ||||||||||||| |||||||| || || ||||| || | || | || Sbjct 1481491 GGTTTTTTGAGAATGTATTGGGCAAAAAAGATTCTAGAGTGGACCAGTACACCTGAACAA 1481550 Query 238698 GCTCTTAGATATAGT--ATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTA 238755 || ||| || || || || ||||| || |||||||| | || || | |||||| | Sbjct 1481551 GCACTT-GA-ATGGTCGATATATCTAAATGATAAATATAGCATGGATGGCAGGGATCCAA 1481608 Query 238756 ACGGATACGTAGGT 238769 |||||||| ||| Sbjct 1481609 GTGGATACGTTGGT 1481622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151390699303576