Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq223 93.3 4e-14 >seq223 Length=3708094 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | || | ||| || ||||| ||| |||||||| |||||||| || | Sbjct 238701 CCTCCGCGAAGTCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGA- 238643 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || |||| |||| || || || | |||| || | |||||||||| || Sbjct 238642 AAGGGTGCGGCCGTCTTCCAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAGG 238583 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | || |||||| || || ||||| | | ||||| |||| || ||| Sbjct 238582 GATTCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCAAC 238523 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||| || ||||| ||||||||||| |||||||| Sbjct 238522 CTCGAGGGTGATCGTTTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 238475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421248520052522