Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq24 217 8e-52 >seq24 Length=1804441 Score = 217 bits (240), Expect = 8e-52 Identities = 360/520 (69%), Gaps = 0/520 (0%) Strand=Plus/Minus Query 3615 CAAATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATA 3674 ||||||| || |||||||||| ||||| || || || || || || ||||| || ||| Sbjct 1484467 CAAATGAGTTATTATATTTTGCAGACGTTTGTGCAGGACCTGGAGGATTCAGCGAGTATG 1484408 Query 3675 TGTTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaaaaaTG 3734 | |||| || ||| | ||| || ||||| | |||| | || | | | |||| Sbjct 1484407 TTTTATCGAAAAAACAGTGGCATGCTAAAGGATTTGGTTTCACACTGAAGGGGGAGAATG 1484348 Query 3735 ATTTTCAACTGAACAGATTTTACGATAACTTTTCGGAAACTTTACACCCGTATTATGGTC 3794 |||| || | | ||| || | | |||||||| || || || ||||| | Sbjct 1484347 ATTTCAAATTAGATGAATTCTATGCAGGGCCGTGTGAAACTTTTCATCCATACTATGGAC 1484288 Query 3795 CGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAATGATTA 3854 | | |||| || |||| || ||||||||| ||| ||| | | |||| | Sbjct 1484287 CAAAACAAAATGGAGATGTCTATGATCTTGAAAATCAGACAGGGTTTCGCAATTTGATAA 1484228 Query 3855 TGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTG 3914 ||||||| || | || |||||| |||||||||||||||||||| ||||| || || |||| Sbjct 1484227 TGAAAGAAACTGGAGAAAAAGGGGTACATTTTATGATGGCTGATGGTGGTTTTTCAGTTG 1484168 Query 3915 AGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAA 3974 | ||||||||||| || ||||| || || || ||| | | ||||| || || ||| || Sbjct 1484167 AAGGTCAAGAAAACATCCAAGAGATATTGTCCAAACAATTATATTTATGCCAGTGTCTAG 1484108 Query 3975 TTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTA 4034 | || | ||||| | | || || || | ||| | ||| | || ||| | || | Sbjct 1484107 TAGCTCTTATGATTGTGAGGGAGGGCGGCCACTTTGTAGTGAAACTATTTGATCTCTTCA 1484048 Query 4035 CACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTT 4094 | | ||| |||| |||| | || ||||| |||||| | | ||| |||| |||||||| | Sbjct 1484047 CCCATTTCAGTGTTGGTCTTGTTTATTTAATGTATCGCTGCTTTGATCGGATTTGTATAT 1483988 Query 4095 TCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATA 4134 ||||||| |||| || || || || |||||||| ||||| Sbjct 1483987 TCAAACCCAATTCTTCCCGCCCTGCAAATTCTGAGAGATA 1483948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276551840600566