Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq346 132 3e-26 seq70 122 5e-23 seq501 120 2e-22 seq492 113 2e-20 seq335 113 2e-20 >seq346 Length=1589992 Score = 132 bits (146), Expect = 3e-26 Identities = 84/92 (91%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 429257 TAAAAAAATAAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 429316 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||||| ||||||||||||||||||||| ||| Sbjct 429317 CGCTCTAACCAACTGAGCTAATGGGCCGACGA 429348 Score = 116 bits (128), Expect = 2e-21 Identities = 78/87 (90%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11446 AAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 418579 AAAAACTAATCCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 418638 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 418639 GCTCTAACCAACTGAGCTAATGGGCCG 418665 >seq70 Length=454373 Score = 122 bits (134), Expect = 5e-23 Identities = 74/79 (94%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 390086 AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 390027 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||| Sbjct 390026 CAACTGAGCTAATGGGCCG 390008 >seq501 Length=2515403 Score = 120 bits (132), Expect = 2e-22 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 1112732 AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1112673 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 1112672 CAACTGAGCTAATGGGCC 1112655 >seq492 Length=410113 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 277867 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 277808 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 277807 TGAGCTAATGGGCC 277794 >seq335 Length=1970560 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1281116 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1281057 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1281056 TGAGCTAATGGGCC 1281043 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261489536425672