Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq223 152 5e-32 seq496 96.9 3e-15 >seq223 Length=3708094 Score = 152 bits (168), Expect = 5e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||||||||||||||| | || || ||| || ||| ||| ||| Sbjct 240051 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCTTCC 239992 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||| ||| ||||||| |||||||| |||||||| ||||| ||||||||||| | Sbjct 239991 AACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGG 239932 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 |||||||| |||||| ||| ||||| | | ||||| || | |||||||| || Sbjct 239931 ATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTTA 239872 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||||||||||| || ||||| Sbjct 239871 CCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || |||||||| || | |||||| ||| || ||| ||| ||| Sbjct 240279 ACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTCC 240220 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||| || | |||||||||||||| || ||||| || || |||||||| || | | Sbjct 240219 AACTGTTTACCCGCGAAGATTAATCTTTGTTGGTCTGGGGGGATTCCTTCTTTATCCTGA 240160 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || | | ||||||| ||||| || | |||||||| || Sbjct 240159 ATCTTCGCCTTCACATTCTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATGGTCTTA 240100 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | |||||||||||| || ||||| Sbjct 240099 CCAGTTAAAGTTTTCACAAAAATTTGCAT 240071 Score = 122 bits (134), Expect = 8e-23 Identities = 178/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 94756 TAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGA 94815 ||||| ||| |||| ||| || || || | | || | || || ||||| || || Sbjct 239866 TAACGTTTTCACAAAAATTTGCATACCCCCACGGAGACGGAGAACTAAATGCAAGGTGGA 239807 Query 94816 TTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAA 94875 ||||||||| | ||| |||||| || ||| ||| || || ||||| || |||| Sbjct 239806 TTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTCTAGTTGTTTGCCAGCAAA 239747 Query 94876 GATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGC 94935 || ||||| ||||| ||||| ||||| || |||||||| | ||| |||||||| || Sbjct 239746 AATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTCACATT 239687 Query 94936 GCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995 ||| ||||| | | ||||| || | ||||| || || || || | ||| ||||| Sbjct 239686 TTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTTACCGGTTAAAGTCTTCAC 239627 Query 94996 AAAGATCTGCAT 95007 ||| |||||||| Sbjct 239626 AAAAATCTGCAT 239615 Score = 118 bits (130), Expect = 1e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||||| | || || | || || || | |||||||||||| || | Sbjct 239626 AAAAATCTGCATACCTCCACGCAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGAT 239567 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || || || || ||| ||| |||| |||||| ||| | || ||||||||||| Sbjct 239566 ATTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGTTTGCCGGCGAAAATTAATCTTTG 239507 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || ||||| || || |||||||| || | ||| |||||||| ||| | | ||||| Sbjct 239506 TTGGTCTGGGGGGATGCCTTCTTTATCCTGAATCTTTGCCTTAACGTTTTCAATGGTGTC 239447 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || | ||||| ||||| || ||||||||||| ||||| || ||||| Sbjct 239446 GGAGGCCTCGACTTCCAAGGTGATTGTTTTACCGGTAAGAGTTTTGACAAAAATTTGCAT 239387 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || ||||||||||| | ||| || || | ||| | || || Sbjct 238684 CACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTC 238625 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||||| |||| || || || |||||||| ||||| || || |||||||| | Sbjct 238624 CAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAGGGATTCCCTCTTTGTCCTG 238565 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || |||||||||||| | | ||||| | || || || | ||||| ||||| Sbjct 238564 GATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATCGTTTT 238505 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || ||||||||||||||||||||| || Sbjct 238504 CCCCGTGAGGGTTTTCACAAAGATCTGCATGATT 238471 Score = 116 bits (128), Expect = 3e-21 Identities = 188/269 (70%), Gaps = 1/269 (0%) Strand=Plus/Minus Query 94742 GATTACTTTATCGCTAACGGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACAC 94800 |||| |||| || ||| ||||| |||| ||| || ||| || | | || | || Sbjct 239425 GATTGTTTTACCGGTAAGAGTTTTGACAAAAATTTGCATTCCACCACGTAGACGAAGAAC 239366 Query 94801 CAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAG 94860 |||||| | ||||||||||||||| | ||| || ||| || || | |||||||| Sbjct 239365 CAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCCAA 239306 Query 94861 CTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAAT 94920 ||||| ||| ||||||| | | || |||||||| || || ||||||||||| | ||| Sbjct 239305 TTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCTTTGTCCTGAAT 239246 Query 94921 TTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 ||| |||||||| | | ||| || | | ||||| || | || || || ||||| Sbjct 239245 TTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGACTTCCAAGGTAATTGTCTTTCC 239186 Query 94981 AGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | || || || || || ||||||| Sbjct 239185 GGTCAAGGTCTTTACGAATATTTGCATGC 239157 Score = 109 bits (120), Expect = 5e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | | ||| | |||||||||| || |||||||| || | || | Sbjct 239165 TTTGCATGCCTCCACGAAGTCGAAGAACCAAGTGCAGCGTGGATTCCTTCTGAATATTGT 239106 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || ||| ||||||||||||||| ||| ||||||| | | ||||||| Sbjct 239105 AGTCCGACAACGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATAAGACGCTGCTGAT 239046 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || ||||||||||| | |||||| || || || ||| ||||||| | Sbjct 239045 CTGGCGGGATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCGATCGTGTCAGAGG 238986 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | || || ||||| || || | || || || ||||||||||| Sbjct 238985 CCTCTACTTCCAGAGTAATAGTTTTGCCCGTCAATGTCTTAACGAAGATCTGCAT 238931 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| || | || ||||| || || | ||| || ||| || ||| | Sbjct 241628 CGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA 241569 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 |||||||||||||| ||| ||||||| | | || || ||||| ||||| ||||||||| Sbjct 241568 TCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGAATTCCTTCTTTG 241509 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| || || || | | ||||| | || || || | |||||| Sbjct 241508 TCCTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAACTTCCAGGGTGATG 241449 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || ||||| || ||||| ||||| Sbjct 241448 GTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | |||||||||||||| | ||||| ||| || ||| ||| ||| Sbjct 240938 ACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGACAAGGTGCGACCATCTTCC 240879 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || ||| | || ||||||| || || ||||| ||||| || |||||||| | Sbjct 240878 AACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCCTGG 240819 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || || ||| | | ||||| | || || || | ||||||||||| Sbjct 240818 ATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTTTTA 240759 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | |||||| ||||| |||||||| Sbjct 240758 CCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || ||||| || || | ||| || ||| | ||| | ||| ||| Sbjct 241166 ACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 241107 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || |||||| ||||||| | ||| ||||| ||||| || || || || ||||| | Sbjct 241106 AATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 241047 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || ||| ||| |||| ||||| || | ||||||||||| Sbjct 241046 ATCTTAGCCTTCACATTCTCGATAGTATCAGATGCTTCGACTTCCAGGGTGATGGTTTTG 240987 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || |||||||| ||||| Sbjct 240986 CCGGTCAGAGTCTTGACAAAGATTTGCAT 240958 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| || |||||| | ||||| ||||||||||| ||||| || || || || || Sbjct 241341 ATCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCCTCCTT 241282 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || ||||| || ||| ||| ||||| | || || || | ||||| Sbjct 241281 GTCCTGGATCTTTGCTTTCACGTTCTCGATGGTGTCGGATGCTTCAACCTCCAGGGTGAT 241222 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||||| || || | ||| || || ||||| ||||||| Sbjct 241221 GGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCATGC 241184 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | || ||||| || || | ||| || || | ||| | ||| ||| Sbjct 238911 ACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCC 238852 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || |||||| ||||||| | ||| ||||| ||||| || || || || ||||| | Sbjct 238851 AATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 238792 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| ||| || || | ||||| || | |||||||| || Sbjct 238791 ATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGACATCGAGAGTGATGGTCTTG 238732 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || | ||| || || ||||||||||||| Sbjct 238731 CCGGTCAAAGTCTTTACGAAGATCTGCATGC 238701 >seq496 Length=1672140 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || ||||| || ||||||| ||||| |||||||| || ||||| ||||| || Sbjct 1564633 ATCTTCTAGTTGTTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGAATTCCTTCCTT 1564574 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || |||||||| | | ||| || | || || |||| ||||| Sbjct 1564573 GTCCTGGATCTTAGCCTTGACATTTTCAATAGTATCGGAAGCCTCCACCTCAAGGGTGAT 1564514 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || || || || ||||| ||||||||||| Sbjct 1564513 GGTTTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 1564478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288274899920