Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_006635.1 Length=29874 Score E Sequences producing significant alignments: (Bits) Value seq17 228 2e-55 seq246 138 2e-28 seq2 129 1e-25 seq479 127 4e-25 seq212 122 2e-23 seq112 122 2e-23 seq496 120 6e-23 seq57 95.1 2e-15 seq505 87.8 3e-13 seq487 87.8 3e-13 seq67 80.6 5e-11 >seq17 Length=585805 Score = 228 bits (252), Expect = 2e-55 Identities = 184/222 (83%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 6563 TTTCTGCCCTCCGGCCGGAAAGTGGCAACTTTCTGGCCGCTGCGCTAAACAAAGTTGCCA 6622 ||||| || ||| |||||||||||||| | | |||||||| ||||||||||||| Sbjct 274462 TTTCTCTCCACCGAGCGGAAAGTGGCAACCGT---GGCGCTGCGCGAAACAAAGTTGCCG 274518 Query 6623 CATTCCGGCTACGTCGAGCAGAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAAGC 6682 | ||||| || ||||| ||||||||||||||||||| ||| ||||||| | ||||| Sbjct 274519 CTTTCCGCCTCTATCGAGGAGAAAAATAGTATACACACTATGGACAGTAAATAAGAAAGC 274578 Query 6683 CTCAGATCACATGTTTGTCAACCTCGGCTTCGCCTCGGCCAACAATTACATGTGATCTGA 6742 |||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||| Sbjct 274579 CTCAGATCACATGTTTGTTAACCTCGACTTTGCCTCGGCCAACAATTACATGTCATCTGA 274638 Query 6743 GACTTTTCTTATTTTACTGGCCTAGGTATGTAATATACTATT 6784 || ||||||| | |||| |||||| |||||||| ||||| Sbjct 274639 AACATTTCTTACTCCACTGCTCTAGGTGTGTAATATGCTATT 274680 Score = 206 bits (228), Expect = 5e-49 Identities = 186/232 (80%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 6003 ATAGTATATTACATACCTAGGCCAGTAAAATAAGAAAAGTCTCAGACCACATGTAATTGC 6062 |||| |||||||| |||||| |||| | ||||||| || ||||| ||||||||||| Sbjct 274679 ATAGCATATTACACACCTAGAGCAGTGGAGTAAGAAATGTTTCAGATGACATGTAATTGT 274620 Query 6063 TGGCCGAGGCGAAGCCAAGGTTGACAAACATGTGGTCTGAGGCTTTACTTTTTACTGGCC 6122 |||||||||| ||| | ||||| ||||||||||| ||||||||||| | ||||||| || Sbjct 274619 TGGCCGAGGCAAAGTCGAGGTTAACAAACATGTGATCTGAGGCTTTCTTATTTACTGTCC 274560 Query 6123 AAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAACGTGGCAACTTTGTTTAGCGC 6182 | ||||||||||||||||||| ||||| || ||||| | ||||||||||||| |||| Sbjct 274559 ATAGTGTGTATACTATTTTTCTCCTCGATAGAGGCGGAAAGCGGCAACTTTGTTTCGCGC 274500 Query 6183 AGCGGCCAGAAAGTTTCCACTTTCCGGCCGGAGGGCAGAAAAACAGTTTTCC 6234 |||| | | ||| |||||||||| ||| || ||||| | | |||||| Sbjct 274499 AGCGCC---ACGGTTGCCACTTTCCGCTCGGTGGAGAGAAATA-ACTTTTCC 274452 >seq246 Length=2929822 Score = 138 bits (152), Expect = 2e-28 Identities = 120/147 (82%), Gaps = 9/147 (6%) Strand=Plus/Minus Query 6642 AGAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAAGCCTCAGATCACATGT--TTG 6699 |||||||||||| || ||| ||| |||| || | ||||||||||||||||||| ||| Sbjct 1681682 AGAAAAATAGTAAACGCACTATGGGCAGTCAATAAGAAAGCCTCAGATCACATGTAATTG 1681623 Query 6700 TCAACCTCGGCTTCG-CCTCGGCCAACAATTACATGTGATCTGAGACTTTTCTTATTTTA 6758 | ||||||| ||||||||||||||| ||||||||||||||| |||||| ||| Sbjct 1681622 TA------GGCTTCGGCCTCGGCCAACAATTGCATGTGATCTGAGACATTTCTTTCCTTA 1681569 Query 6759 CTGGCCTAGGTATGTAATATACTATTT 6785 ||||||||||| || || ||||||||| Sbjct 1681568 CTGGCCTAGGTGTGCAACATACTATTT 1681542 Score = 122 bits (134), Expect = 2e-23 Identities = 115/145 (79%), Gaps = 9/145 (6%) Strand=Plus/Plus Query 6003 ATAGTATATTACATACCTAGGCCAGTAAAATAAGAAAAGTCTCAGACCACATGTAATTGC 6062 ||||||| || || |||||||||||||| |||||| |||||||| |||||| ||||| Sbjct 1681544 ATAGTATGTTGCACACCTAGGCCAGTAAGGAAAGAAATGTCTCAGATCACATGCAATTGT 1681603 Query 6063 TGGCCGAGG-CGAAGCCAAGGTTGACAA--ACATGTGGTCTGAGGCTTTACTTTTTACTG 6119 ||||||||| ||||||| |||| ||||||| ||||||||||| | || |||| Sbjct 1681604 TGGCCGAGGCCGAAGCC------TACAATTACATGTGATCTGAGGCTTTCTTATTGACTG 1681657 Query 6120 GCCAAGGTGTGTATACTATTTTTCT 6144 ||| ||| || |||||||||||| Sbjct 1681658 CCCATAGTGCGTTTACTATTTTTCT 1681682 >seq2 Length=4278185 Score = 129 bits (142), Expect = 1e-25 Identities = 114/144 (79%), Gaps = 14/144 (10%) Strand=Plus/Minus Query 6643 GAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAAGCCTCAGATCACATGTTTGTCA 6702 ||||| ||||||||||| ||| ||||||| | ||||||||||||||| Sbjct 895240 GAAAACCAGTATACACACTATGGACAGTAAATAAAAAAGCCTCAGATCAC---------- 895191 Query 6703 ACCTCGGCTTCGCCTCGGCCAACAATTACATGTGATCTGAGACTTTTCTTATTTTACTGG 6762 | |||| ||||||||||||||||||||||| ||||||||| ||||||| ||| ||| Sbjct 895190 ---TAGGCTACGCCTCGGCCAACAATTACATGTAATCTGAGACATTTCTTACTTTGCTGC 895134 Query 6763 CCTAGGTATGTAATATACT-ATTT 6785 ||||||| ||||||||||| |||| Sbjct 895133 CCTAGGTGTGTAATATACTGATTT 895110 Score = 114 bits (126), Expect = 2e-21 Identities = 107/139 (77%), Gaps = 13/139 (9%) Strand=Plus/Plus Query 6005 AGTATATTACATACCTAGGCCAGTAAAATAAGAAAAGTCTCAGACCACATGTAATTGCTG 6064 ||||||||||| ||||||| ||| ||| ||||||| |||||||| ||||||||||| || Sbjct 895115 AGTATATTACACACCTAGGGCAGCAAAGTAAGAAATGTCTCAGATTACATGTAATTGTTG 895174 Query 6065 GCCGAGGCGAAGCCAAGGTTGACAAACATGTGGTCTGAGGCTTTACTTTTTACTGGCCAA 6124 ||||||||| |||| | ||| ||||||||||| | ||||||| ||| Sbjct 895175 GCCGAGGCGTAGCCTA-------------GTGATCTGAGGCTTTTTTATTTACTGTCCAT 895221 Query 6125 GGTGTGTATACTATTTTTC 6143 ||||||||||| ||||| Sbjct 895222 AGTGTGTATACTGGTTTTC 895240 >seq479 Length=3228869 Score = 127 bits (140), Expect = 4e-25 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 6554 AAATTTCTTTTTCTGCCCTCCGGCCGGAAAGTGGCAACTTTCTGGCCGCTGCGCTAAACA 6613 |||||| ||||||| ||||||| ||||||| | | | |||| ||||||||| |||| Sbjct 2933507 AAATTTTTTTTTCTCCCCTCCGCGCGGAAAGCGACGAATTTCATCCCGCTGCGCGAAACG 2933566 Query 6614 AAGTTGCCACATTCCGGCTACGTCGAGCAGAAAAATAGTATACACACCTTGGCCAGTAAA 6673 |||||| | | || || || ||| ||| |||||||||||||||||||| || ||||||| Sbjct 2933567 AAGTTGTCGCTTTTCGCCTCCGTTGAGAAGAAAAATAGTATACACACCACGGGCAGTAAA 2933626 Query 6674 AAGTAAAGCCTCAGATCACATGT 6696 | || |||||||||||| ||| Sbjct 2933627 TAAGAAGGCCTCAGATCACTTGT 2933649 Score = 114 bits (126), Expect = 2e-21 Identities = 159/225 (71%), Gaps = 27/225 (12%) Strand=Plus/Minus Query 6001 ATATAGTATATTACATACCTAGGCCAGTAAAATAAGAAAAGTCTCAGACCACATGTAATT 6060 ||||||||||||||| ||||||| ||| ||| ||||||| |||| Sbjct 2933711 ATATAGTATATTACACACCTAGGGCAGCAAAGTAAGAAATGTCT---------------- 2933668 Query 6061 GCTGGCCGAGGCGAAGCCAAGGTTGACAAACATGTGGTCTGAGGCTTTACTTTTTACTGG 6120 | ||| ||| || ||| | |||| ||| |||||||| || | ||||||| Sbjct 2933667 --TCGCCTCGGCCAA--CAA---TTACAA----GTGATCTGAGGCCTTCTTATTTACTGC 2933619 Query 6121 CCAAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAACGTGGCAACTTTGTTTAGC 6180 || |||||||||||||||||||| ||| ||| || || || | | |||||| |||| || Sbjct 2933618 CCGTGGTGTGTATACTATTTTTCTTCTCAACGGAGGCGAAAAGCGACAACTTCGTTTCGC 2933559 Query 6181 GCAGCGGCCAGAAAGTTTCCACTTTCCGGCCGGAGGGCAGAAAAA 6225 ||||||| |||| | | ||||||| ||||||| ||||||| Sbjct 2933558 GCAGCGGGATGAAATTCGTCGCTTTCCGCGCGGAGGGGAGAAAAA 2933514 >seq212 Length=2700027 Score = 122 bits (134), Expect = 2e-23 Identities = 105/130 (81%), Gaps = 4/130 (3%) Strand=Plus/Plus Query 6561 TTTTTCTGCCCTCCGGCCGGAAAGTGGCAACTTTCTGGCCGCTGCGCTAAACAAAGTTGC 6620 ||||||| |||||||| | ||||| ||||||||| | | |||| |||| || |||| Sbjct 573929 TTTTTCTCCCCTCCGGGCAGAAAGCGGCAACTTTGTTTC----GCGCGAAACCAAATTGC 573984 Query 6621 CACATTCCGGCTACGTCGAGCAGAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAA 6680 | | ||| |||| ||||||| |||||||||||||||||||| ||| |||| || | ||| Sbjct 573985 CGCTTTCTGGCTCCGTCGAGGAGAAAAATAGTATACACACCATGGGCAGTTAATAAAAAA 574044 Query 6681 GCCTCAGATC 6690 |||||||||| Sbjct 574045 GCCTCAGATC 574054 Score = 113 bits (124), Expect = 9e-21 Identities = 102/128 (80%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 6098 TCTGAGGCTTTACTTTTTACTGGCCAAGGTGTGTATACTATTTTTCTGCTCGACGTAGCC 6157 ||||||||||| | || |||| ||| |||||||||||||||||||| ||||||| |||| Sbjct 574052 TCTGAGGCTTTTTTATTAACTGCCCATGGTGTGTATACTATTTTTCTCCTCGACGGAGCC 573993 Query 6158 GGAACGTGGCAACTTTGTTTAGCGCAGCGGCCAGAAAGTTTCCACTTTCCGGCCGGAGGG 6217 ||| | ||||| || |||| |||| | | |||||| || ||||| | |||||||| Sbjct 573992 AGAAAGCGGCAATTTGGTTTCGCGC----GAAACAAAGTTGCCGCTTTCTGCCCGGAGGG 573937 Query 6218 CAGAAAAA 6225 ||||||| Sbjct 573936 GAGAAAAA 573929 >seq112 Length=1786610 Score = 122 bits (134), Expect = 2e-23 Identities = 148/208 (71%), Gaps = 29/208 (14%) Strand=Plus/Minus Query 6578 CGGAAAGTGGCAACTTTCTGGCCGCTGCGCTAAACAAAGTTGCCACATTCCGGCTACGTC 6637 ||||||| |||||||||| |||||| || || | || ||||| | || || || |||| Sbjct 1481799 CGGAAAGCGGCAACTTTCCTCCCGCTGAGCGAAGCGAATTTGCCGCTTTTCGCCTCCGTC 1481740 Query 6638 GAGCAGAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAAGCCTCAGATCACATGTT 6697 ||| | |||||| ||| ||||| | ||| ||||||| | ||||| Sbjct 1481739 GAGGAAAAAAATGGTAAACACAACATGGGCAGTAAATAAGAAAGC--------------- 1481695 Query 6698 TGTCAACCTCGGCTTCGCCTCGGCCAACAATTACATGTGATCTGAGACTTTTCTTATTTT 6757 |||||||||||||||||| |||||||||||||||| ||||||| ||| Sbjct 1481694 -------------TTCGCCTCGGCCAACAATCACATGTGATCTGAGACATTTCTTACTTT 1481648 Query 6758 ACTGGCCTAGGTATGTAATATACTATTT 6785 || ||||||| |||||||||| |||| Sbjct 1481647 GCT-CCCTAGGTGTGTAATATACCATTT 1481621 Score = 113 bits (124), Expect = 9e-21 Identities = 121/165 (73%), Gaps = 25/165 (15%) Strand=Plus/Plus Query 6626 TCCGGCTACGTCGAGCAGAAAAATAGTATACACACCTTGGCCAGTAAA--AAGTAAAGCC 6683 |||| || ||||||| |||||||||||||||| || || ||||||| ||| || | Sbjct 518865 TCCGCCTCCGTCGAGGAGAAAAATAGTATACAACCCAGGGGCAGTAAAGTAAGGAATTTC 518924 Query 6684 TCAGATCACATGTTTGTCAACCTCGGCTTCGCCTCGGCCAACAATTACATGTGATCTGAG 6743 ||||||||| |||||||||| ||||||||||||||||| Sbjct 518925 TCAGATCAC-----------------------CTCGGCCAACGATTACATGTGATCTGAG 518961 Query 6744 ACTTTTCTTATTTTACTGGCCTAGGTATGTAATATACTATTTATT 6788 || |||| || ||||||| ||||||| ||||||||||||||| || Sbjct 518962 ACATTTCATACTTTACTGTCCTAGGTGTGTAATATACTATTTTTT 519006 Score = 105 bits (116), Expect = 1e-18 Identities = 143/206 (69%), Gaps = 29/206 (14%) Strand=Plus/Plus Query 6003 ATAGTATATTACATACCTAGGCCAGTAAAATAAGAAAAGTCTCAGACCACATGTAATTGC 6062 || |||||||||| ||||||| || ||| ||||||| |||||||| ||||||| |||| Sbjct 1481623 ATGGTATATTACACACCTAGGG-AGCAAAGTAAGAAATGTCTCAGATCACATGTGATTGT 1481681 Query 6063 TGGCCGAGGCGAAGCCAAGGTTGACAAACATGTGGTCTGAGGCTTTACTTTTTACTGGCC 6122 ||||||||||||| ||||| | ||||||| || Sbjct 1481682 TGGCCGAGGCGAA----------------------------GCTTTCTTATTTACTGCCC 1481713 Query 6123 AAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAACGTGGCAACTTTGTTTAGCGC 6182 | | ||||| ||| |||||| | ||||||| || || || | ||||| || | || || | Sbjct 1481714 ATGTTGTGTTTACCATTTTTTTCCTCGACGGAGGCGAAAAGCGGCAAATTCGCTTCGCTC 1481773 Query 6183 AGCGGCCAGAAAGTTTCCACTTTCCG 6208 ||||| ||||||| || ||||||| Sbjct 1481774 AGCGGGAGGAAAGTTGCCGCTTTCCG 1481799 Score = 95.1 bits (104), Expect = 2e-15 Identities = 114/160 (71%), Gaps = 25/160 (16%) Strand=Plus/Minus Query 6003 ATAGTATATTACATACCTAGGCCAGTAAAATAAGAAAAGTCTCAGACCACATGTAATTGC 6062 ||||||||||||| ||||||| ||||||| || |||| |||||||| |||||||||| | Sbjct 519001 ATAGTATATTACACACCTAGGACAGTAAAGTATGAAATGTCTCAGATCACATGTAATCGT 518942 Query 6063 TGGCCGAGGCGAAGCCAAGGTTGACAAACATGTGGTCTGAGGCTTTACTT--TTTACTGG 6120 |||||||| ||| |||||| || ||| ||||||| Sbjct 518941 TGGCCGAG-----------------------GTGATCTGAGAAATTCCTTACTTTACTGC 518905 Query 6121 CCAAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGA 6160 || || |||||||||||||||| ||||||| || |||| Sbjct 518904 CCCTGGGTTGTATACTATTTTTCTCCTCGACGGAGGCGGA 518865 >seq496 Length=1672140 Score = 120 bits (132), Expect = 6e-23 Identities = 77/84 (92%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 6705 CTCGGCTTCGCCTCGGCCAACAATTACATGTGATCTGAGACTTTTCTTATTTTACTGGCC 6764 ||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| || Sbjct 1645212 CTCGGCTTCGCCTCGGCCAACAATTACATGTGATCCGAGACATTTCTTACTTTACTGCCC 1645271 Query 6765 TAGGTATGTAATATACTATTTATT 6788 ||||| ||| |||||||||| ||| Sbjct 1645272 TAGGTGTGTTATATACTATTGATT 1645295 Score = 102 bits (112), Expect = 2e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 6003 ATAGTATATTACATACCTAGGCCAGTAAAATAAGAAAAGTCTCAGACCACATGTAATTGC 6062 ||||||||| ||| ||||||| ||||||| ||||||| ||||| || |||||||||||| Sbjct 1645290 ATAGTATATAACACACCTAGGGCAGTAAAGTAAGAAATGTCTCGGATCACATGTAATTGT 1645231 Query 6063 TGGCCGAGGCGAAGCCAAG 6081 |||||||||||||||| || Sbjct 1645230 TGGCCGAGGCGAAGCCGAG 1645212 >seq57 Length=528912 Score = 95.1 bits (104), Expect = 2e-15 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 6561 TTTTTCTGCCCTCCGGCCGGAAAGTGGCAACTTTCTGGCCGCTGCGCTAAACAAAGTTGC 6620 ||||||| ||| |||| ||||||| |||| |||| ||||||||| |||| ||||||| Sbjct 377568 TTTTTCTTCCCACCGGGCGGAAAGCGGCATTTTTCGTCCCGCTGCGCGAAACTAAGTTGC 377627 Query 6621 CACATTCCGGCTACGTCGAGCAGAAAAATAGTATACACACCTTGG 6665 | | || | || ||| ||| |||||||||||||| ||||| ||| Sbjct 377628 CGCTTTTCACCTCCGTTGAGGAGAAAAATAGTATAAACACCATGG 377672 Score = 93.3 bits (102), Expect = 8e-15 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 6121 CCAAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAACGTGGCAACTTTGTTTAGC 6180 ||| ||||| |||||||||||||| ||| ||| || | || | |||||||| |||| || Sbjct 377672 CCATGGTGTTTATACTATTTTTCTCCTCAACGGAGGTGAAAAGCGGCAACTTAGTTTCGC 377613 Query 6181 GCAGCGGCCAGAAAGTTTCCACTTTCCGGCCGGAGGGCAGAAAAA--CAGTTTTC 6233 ||||||| |||| | || ||||||| |||| ||| ||||||| ||||||| Sbjct 377612 GCAGCGGGACGAAAAATGCCGCTTTCCGCCCGGTGGGAAGAAAAATCAAGTTTTC 377558 >seq505 Length=154513 Score = 87.8 bits (96), Expect = 3e-13 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 3742 CATTAATTACGTGAGCTCAGAATGAGGGGGGAGGGGTCCAATGAAATCTCACTAAATCTC 3801 ||||||||||||||||||| | | | || |||||||| |||||||||| ||||||| Sbjct 8669 CATTAATTACGTGAGCTCATTACGGGATGGAAGGGGTCCGATGAAATCTCGTCAAATCTC 8610 Query 3802 ATCTAAGCCGAGGGGGAGATAATCAAAAATCTCACCTCAACTT 3844 || || | | ||| | | |||| |||||||||| ||||||| Sbjct 8609 ATTCAAACGGTGGGCGGCAGAATCGAAAATCTCACGTCAACTT 8567 >seq487 Length=329773 Score = 87.8 bits (96), Expect = 3e-13 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 3742 CATTAATTACGTGAGCTCAGAATGAGGGGGGAGGGGTCCAATGAAATCTCACTAAATCTC 3801 ||||||||||||||||||| | | | || |||||||| |||||||||| ||||||| Sbjct 329297 CATTAATTACGTGAGCTCATTACGGGATGGAAGGGGTCCGATGAAATCTCGTCAAATCTC 329238 Query 3802 ATCTAAGCCGAGGGGGAGATAATCAAAAATCTCACCTCAACTT 3844 || || | | ||| | | |||| |||||||||| ||||||| Sbjct 329237 ATTCAAACGGTGGGCGGCAGAATCGAAAATCTCACGTCAACTT 329195 >seq67 Length=137900 Score = 80.6 bits (88), Expect = 5e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 6708 GGCTTCGCCTCGGCCAACAATTACATGTGATCTGAGACTTTTCTTATTTTACTGGCCTAG 6767 || |||| ||||||||||||||| |||| |||||| | ||||||| ||| ||| |||| Sbjct 107933 GGTTTCGTCTCGGCCAACAATTATATGTTATCTGAACCATTTCTTACTTTGCTGCACTAG 107874 Query 6768 GTATGTAATATACTATT 6784 | |||||||||||||| Sbjct 107873 ATGTGTAATATACTATT 107857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95474608173104