Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq495 174 2e-39 seq246 170 3e-38 seq124 167 4e-37 seq496 96.9 5e-16 >seq495 Length=2556717 Score = 174 bits (192), Expect = 2e-39 Identities = 201/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||| | | | |||| ||||| |||||||| || ||||| ||||| || || Sbjct 1123387 GCGAAGCGGCATAGGAAAG-TCTTGCGAGACAACATCCAGGGTATCACAAAGCCCGCAAT 1123329 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||||| ||||| ||| | |||| || || | || || |||| Sbjct 1123328 TCGTCGTCTGGCTCGTCGTGGCGGAGTGAAGAGAATCTCCGGTCTGATTTACGAGGAGAC 1123269 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| | ||| | || || ||| ||| || | ||| ||| | || ||||| Sbjct 1123268 TCGTGGTGTCCTCAAGGTATTTCTTGAGAACGTAATTCGTGACGCTGTGACGTACACCGA 1123209 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| ||||||| || |||||||| ||||| Sbjct 1123208 GCACGCCAAGAGAAAGACCGTAACCGCCATGGATGTCGTCTACGCCTTGAAACGACAAGG 1123149 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || ||||| || ||||| Sbjct 1123148 CCGTACCCTGTACGGTTTCGGGGGTTAA 1123121 Score = 174 bits (192), Expect = 2e-39 Identities = 201/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||| | | | |||| ||||| |||||||| || ||||| ||||| || || Sbjct 1138043 GCGAAGCGGCATAGGAAAG-TCTTGCGAGACAACATCCAGGGTATCACAAAGCCCGCAAT 1137985 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||||| ||||| ||| | |||| || || | || || |||| Sbjct 1137984 TCGTCGTCTGGCTCGTCGTGGCGGAGTGAAGAGAATCTCCGGTCTGATTTACGAGGAGAC 1137925 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| | ||| | || || ||| ||| || | ||| ||| | || ||||| Sbjct 1137924 TCGTGGTGTCCTCAAGGTATTTCTTGAGAACGTAATTCGTGACGCTGTGACGTACACCGA 1137865 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| ||||||| || |||||||| ||||| Sbjct 1137864 GCACGCCAAGAGAAAGACCGTAACCGCCATGGATGTCGTCTACGCCTTGAAACGACAAGG 1137805 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || ||||| || ||||| Sbjct 1137804 CCGTACCCTGTACGGTTTCGGGGGTTAA 1137777 >seq246 Length=2929822 Score = 170 bits (188), Expect = 3e-38 Identities = 186/247 (75%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||||||||| || || || ||||| ||||| |||||| ||||||| ||||| Sbjct 1815992 TCTCCGTGATAACATCCAGGGTATAACGAAGCCCGCTATTCGTCGTTTGGCTCGGCGTGG 1816051 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||| || ||| |||| ||| | |||| ||||| | ||||| |||||||| | || Sbjct 1816052 TGGAGTGAAACGTATCTCGGGACTCATCTACGAAGAAACTCGTGGAGTTTTGAAAGTGTT 1816111 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | |||||| | ||||| || ||| ||||| ||||| || | ||||| || Sbjct 1816112 TCTCGAAAACGTTATTCGGGATGCGGTCACCTACACCGAACACGCCAAGAGGAAGACAGT 1816171 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| |||||||||| |||||||| || || || | |||| || || || Sbjct 1816172 AACGGCAATGGACGTCGTCTATGCGTTGAAACGCCAGGGACGCACTCTTTACGGATTCGG 1816231 Query 16693 AAGTTAA 16699 | ||||| Sbjct 1816232 AGGTTAA 1816238 >seq124 Length=2439213 Score = 167 bits (184), Expect = 4e-37 Identities = 192/258 (74%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||| |||||||| |||||||| ||||| || ||||| || ||||||||||| Sbjct 2282010 TCTTCGTGATAATATCCAAGGTATCACCAAACCAGCCATTCGTCGACTTGCTCGTCGTGG 2282069 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || || | | || |||||| |||| ||||| | ||||| || ||||| | || Sbjct 2282070 TGGTGTGAAAAGAATATCCGGATTGATCTACGAAGAAACTCGTGGAGTCCTGAAGGTATT 2282129 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || | | ||| |||| ||| || | ||| || || ||||| || | |||||||| Sbjct 2282130 TCTTGAAAACGTCATCCGTGACGCAGTTACCTACACTGAACACGCCAAGAGGAAGACTGT 2282189 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | ||||| ||||||| || ||||||||||||||||| | | || ||||| || Sbjct 2282190 TACCGCAATGGACGTCGTCTACGCCTTGAAACGTCAAGGCCGCACTCTCTACGGTTTCGG 2282249 Query 16693 AAGTTAA----TCTTCTA 16706 | | ||| ||||||| Sbjct 2282250 AGGCTAAAGGCTCTTCTA 2282267 >seq496 Length=1672140 Score = 96.9 bits (106), Expect = 5e-16 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| ||||| || ||||| || || || ||||||||||||||||| ||| Sbjct 895129 CGTGATAACATCCAGGGAATAACGAAGCCGGCCATTCGCCGTCTGGCTCGTCGTGGCGGA 895070 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 || || ||| | || ||||| | |||||||| | ||| | ||| ||||| Sbjct 895069 GTTAAACGTATTTCCGGATTAATTTATGAAGAAACTCGCGGTGTGCTGAAG 895019 Score = 93.3 bits (102), Expect = 7e-15 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || || || ||||| || || || ||||||||||||||||| || Sbjct 1154411 CGTGATAACATCCAGGGTATAACAAAGCCGGCCATTCGCCGTCTGGCTCGTCGTGGCGGT 1154470 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGT 16560 || || ||| | |||||| | |||||||||| | ||||| ||| Sbjct 1154471 GTAAAACGTATTTCTGGACTAATCTATGAAGAAACTCGTGGTGT 1154514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074722731746