Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_006643.1 Length=12903 Score E Sequences producing significant alignments: (Bits) Value seq323 116 3e-22 seq68 111 1e-20 >seq323 Length=481653 Score = 116 bits (128), Expect = 3e-22 Identities = 95/119 (80%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 11909 CCCTGATTaaaaaaaaGTATTGAGACAAAG-NNNNNNNNNNNNNNAAGAATTGGtttttt 11967 |||||||||||||||||||||||||||||| || ||||| |||| Sbjct 71446 CCCTGATTAAAAAAAAGTATTGAGACAAAGAAAAAGGTATTTGAAAAAAATTGCTTTTCC 71387 Query 11968 agtcaatccaatacttttcaatatttttttctttgtctcaatacttttttttATTCAGG 12026 ||||||||||||||||||||| | |||||| || |||||||||||||||||||||||| Sbjct 71386 AGTCAATCCAATACTTTTCAAAACTTTTTTATTCATCTCAATACTTTTTTTTATTCAGG 71328 Score = 116 bits (128), Expect = 3e-22 Identities = 95/119 (80%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 2006 CCCTGATTaaaaaaaaGTATTGAGACAAAG-NNNNNNNNNNNNNNAAGAATTGGtttttt 2064 |||||||||||||||||||||||||||||| || ||||| |||| Sbjct 71446 CCCTGATTAAAAAAAAGTATTGAGACAAAGAAAAAGGTATTTGAAAAAAATTGCTTTTCC 71387 Query 2065 agtcaatccaatacttttcaatatttttttctttgtctcaatacttttttttATTCAGG 2123 ||||||||||||||||||||| | |||||| || |||||||||||||||||||||||| Sbjct 71386 AGTCAATCCAATACTTTTCAAAACTTTTTTATTCATCTCAATACTTTTTTTTATTCAGG 71328 >seq68 Length=1569599 Score = 111 bits (122), Expect = 1e-20 Identities = 94/119 (79%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 11909 CCCTGATTaaaaaaaaGTATTGAGACAAAG-NNNNNNNNNNNNNNAAGAATTGGtttttt 11967 ||||||||||||| |||||||||||||||| || ||||| |||| Sbjct 33416 CCCTGATTAAAAAGAAGTATTGAGACAAAGAAAAAGGTATTTAAAAAAAATTGCTTTTCC 33357 Query 11968 agtcaatccaatacttttcaatatttttttctttgtctcaatacttttttttATTCAGG 12026 |||||||||||||||||||| | |||||| ||| |||||||||||||||||||||||| Sbjct 33356 AGTCAATCCAATACTTTTCAGAACTTTTTTATTTATCTCAATACTTTTTTTTATTCAGG 33298 Score = 111 bits (122), Expect = 1e-20 Identities = 94/119 (79%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 2006 CCCTGATTaaaaaaaaGTATTGAGACAAAG-NNNNNNNNNNNNNNAAGAATTGGtttttt 2064 ||||||||||||| |||||||||||||||| || ||||| |||| Sbjct 33416 CCCTGATTAAAAAGAAGTATTGAGACAAAGAAAAAGGTATTTAAAAAAAATTGCTTTTCC 33357 Query 2065 agtcaatccaatacttttcaatatttttttctttgtctcaatacttttttttATTCAGG 2123 |||||||||||||||||||| | |||||| ||| |||||||||||||||||||||||| Sbjct 33356 AGTCAATCCAATACTTTTCAGAACTTTTTTATTTATCTCAATACTTTTTTTTATTCAGG 33298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41174158203336