Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_006645.1 Length=21388 Score E Sequences producing significant alignments: (Bits) Value seq10 104 3e-18 seq24 91.5 2e-14 seq82 84.2 3e-12 seq522 82.4 1e-11 >seq10 Length=137715 Score = 104 bits (114), Expect = 3e-18 Identities = 144/208 (69%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 3037 CTGCTTGAACATGTACATTGCAAGTGTGGAAATTTTTAACTATAAAATAAATTCGAGGtt 3096 |||| ||||||| |||||||||||| | |||| |||| | ||| || | | Sbjct 131619 CTGCACGAACATGAACATTGCAAGTGCGATAATTATTAAGCAGTGAATC---TCAATTAT 131563 Query 3097 tttttCTCTCTTGGAGCAATTCTTAAAAGGCTCCAGAATAGATCCCCGTTGGANNNNNNN 3156 ||||||| ||||||||| |||||| ||||||| |||||||||||||||| | Sbjct 131562 TTTTTCTTTCTTGGAGCTATTCTTGAAAGGCTTTAGAATAGATCCCCGTTCAAACAATTT 131503 Query 3157 NNNNNNNNNNNNNTCTTAGTTTTTTATTAATAATTTTCGTTGTTGCAAAATTAAAAACTC 3216 | | | ||||| ||||| ||||| ||| |||| |||| | |||||| Sbjct 131502 AAAAATGTTCATTTTTCACTTTTTCATTAACAATTTACGTAGTTGAGAAATGACAAACTC 131443 Query 3217 AAATTAACTATCGAAAAAATTTATTTTT 3244 ||||||| || ||||| ||| ||||| Sbjct 131442 GAATTAACCATACAAAAATTTTTTTTTT 131415 Score = 98.7 bits (108), Expect = 1e-16 Identities = 143/208 (69%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 3037 CTGCTTGAACATGTACATTGCAAGTGTGGAAATTTTTAACTATAAAATAAATTCGAGGtt 3096 |||| ||||||| |||||||||||| | |||| |||| | ||| || | | Sbjct 133014 CTGCACGAACATGAACATTGCAAGTGCGATAATTATTAAGCAGTGAATC---TCAATTAT 132958 Query 3097 tttttCTCTCTTGGAGCAATTCTTAAAAGGCTCCAGAATAGATCCCCGTTGGANNNNNNN 3156 |||||| ||||||||| |||||| ||||||| |||||||||||||||| | Sbjct 132957 TTTTTCATTCTTGGAGCTATTCTTGAAAGGCTTTAGAATAGATCCCCGTTCAAACAATTT 132898 Query 3157 NNNNNNNNNNNNNTCTTAGTTTTTTATTAATAATTTTCGTTGTTGCAAAATTAAAAACTC 3216 | | | ||||| ||||| ||||| ||| |||| |||| | |||||| Sbjct 132897 AAAAATGTTCATTTTTCACTTTTTCATTAACAATTTACGTAGTTGAGAAATGACAAACTC 132838 Query 3217 AAATTAACTATCGAAAAAATTTATTTTT 3244 ||||||| || ||||| ||| ||||| Sbjct 132837 GAATTAACCATACAAAAATTTTTTTTTT 132810 >seq24 Length=1804441 Score = 91.5 bits (100), Expect = 2e-14 Identities = 197/294 (67%), Gaps = 27/294 (9%) Strand=Plus/Plus Query 6081 GTGATGATTGATCTATAATACCAATTTTATTGAT--TATAGTATAACTATTTTCAGTATG 6138 ||||| |||||||| ||| || | |||| | |||||| ||| ||||| | ||| Sbjct 1497925 GTGATTATTGATCTTGAATTTTAAGTATATTTAAAATATAGTTTAATTATTTG-ATAATG 1497983 Query 6139 CTTAACCCGCAGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATTCGTAAGGTTTTT 6198 | || || ||||||||||||| | |||||||||||| |||| |||||| Sbjct 1497984 TTGAAAACG---GCCTTATTACCCTTCTATAGTAAAATAAGGCCTACATGTAAGG----- 1498035 Query 6199 GAAAAAATTTAATTTTGTGTTTGTTTATGGTGAAAATTACCATTACTCCATTATAGTTTA 6258 |||| |||||||||||| ||| |||||||| | ||||| |||| Sbjct 1498036 ------------GTTTGGTTTTGTTTATGGTAAAATTTACCATTTTTTATTTATATTTTA 1498083 Query 6259 TGGCTAGTGTATTGATATAAAAATT--AATGATACATTTCAATGATTGAATGTAATATTT 6316 | | | || | | |||| ||| |||| | || | ||||| ||| |||||| Sbjct 1498084 TAGAAAATGCCCTTAAATAACGATTGACATGAAAACTT--ATTGATTAAATTCGATATTT 1498141 Query 6317 TCGATTTTATTCAAAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGTACCTTA 6370 | |||| ||| |||| || ||||||||| ||||||||| || |||| ||| Sbjct 1498142 TTAATTTCATTACAAATATCATTTAGCTAGGTCTTATTACCTGCAGGTACGTTA 1498195 >seq82 Length=450525 Score = 84.2 bits (92), Expect = 3e-12 Identities = 86/112 (77%), Gaps = 3/112 (3%) Strand=Plus/Plus Query 6057 AAGAAGTATTGTTGCTAAATTTAAGTGATGATTGATCTATAATACCAATTTTATTGATTA 6116 ||| |||||| ||||| ||| | ||| |||||||| |||||||| |||||| | || Sbjct 35675 AAGCAGTATTATTGCTGCATTCACAAGATTATTGATCTCAAATACCAAATTTATTAAGTA 35734 Query 6117 TAGTATAACTATTT---TCAGTATGCTTAACCCGCAGGCCTTATTACCCTAC 6165 |||| || ||||| | | ||||| ||| || ||||||||||||||||| Sbjct 35735 TAGTTCAATTATTTAAGTATGCATGCTAAACGCGAAGGCCTTATTACCCTAC 35786 >seq522 Length=248043 Score = 82.4 bits (90), Expect = 1e-11 Identities = 138/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 2800 TATAATTTTCCCAGAG--GGATGAAAATACGGTCAAAAACGGGTACTTTGACTTGTGTAA 2857 ||| |||| ||||||| || | ||| ||||| | | |||||||| | || || | | Sbjct 61531 TATGATTTCCCCAGAGTTGGTTTAAACTACGGCCGATAACGGGTATTCTGGCTCGCGCGC 61472 Query 2858 GCCACGCCTCCTTTGGACACTttattaatgaaaattattta---aaaatattacatataa 2914 | ||||| || | |||||| | || |||||| ||| || ||||| |||| | Sbjct 61471 GTGACGCCCACTCCGAACACTTGAACGATAAAAATTTCTTAGGTAAGTTATTAAATATGA 61412 Query 2915 aatttaagaaatgaaaaaaatCAGAGGCTTACTGGATAGATAAATGAAAAATAATTCGCC 2974 || |||| ||||| ||| |||| | ||||| | |||||||| ||| ||||| ||| Sbjct 61411 AAATTAAAGAATGAGAAAT-TCAGGGACTTACGGAATAGATAAGGGAACGATAATCCGCT 61353 Query 2975 TGAAAGAAATTTTTATC 2991 | | ||||||||||| Sbjct 61352 AGCTAAAAATTTTTATC 61336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 68322787626786