Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_006646.1 Length=31972 Score E Sequences producing significant alignments: (Bits) Value seq57 96.9 7e-16 >seq57 Length=528912 Score = 96.9 bits (106), Expect = 7e-16 Identities = 89/113 (79%), Gaps = 5/113 (4%) Strand=Plus/Minus Query 17877 TCGTCCATTGCGTTATGCCGGTGGAAAACGATGGAATCTATTTTGATTTTCCTT-----C 17931 |||||| || || | | ||||||| |||||||| ||||| |||||||||| || | Sbjct 289609 TCGTCCGTTTCGACACGGCGGTGGAGAACGATGGGATCTACTTTGATTTTCGTTACCTAC 289550 Query 17932 TAAGCGCCAGTCGATAAACACCCATTTAGGGTTCGCATCGCAGCCGTCATAAA 17984 || ||||| ||||||||||| |||||| ||||||| ||||||| | ||||| Sbjct 289549 TAGGCGCCGGTCGATAAACAGCCATTTGGGGTTCGGTTCGCAGCTTTTATAAA 289497 Score = 82.4 bits (90), Expect = 2e-11 Identities = 95/127 (75%), Gaps = 6/127 (5%) Strand=Plus/Plus Query 17893 GCCGGTGGAAAACGATGGAATCTATTTTGATTT-----TCCTTCTAAGCGCCAGTCGATA 17947 ||||||||||||||| | ||||| ||||||||| | | || | |||| ||||||| Sbjct 109847 GCCGGTGGAAAACGAGGAAATCTGTTTTGATTTTTTACTGTTACTGAACGCCGGTCGATA 109906 Query 17948 AACACCCATTTA-GGGTTCGCATCGCAGCCGTCATAAAGTGTACAAAACAGGTACGCGTT 18006 |||| ||| ||| ||||| || |||||| | | | |||| | || | || | ||||| Sbjct 109907 AACAGCCACTTAGGGGTTTGCTTCGCAGACATGAGAAAGCGCGATAATCGGGCATGCGTT 109966 Query 18007 GAATAAA 18013 ||||||| Sbjct 109967 GAATAAA 109973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102188166557176