Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_006649.1 Length=32108 Score E Sequences producing significant alignments: (Bits) Value seq17 203 7e-48 seq479 122 2e-23 seq246 122 2e-23 seq212 114 3e-21 seq2 114 3e-21 seq112 100 6e-17 seq496 98.7 2e-16 seq57 89.7 1e-13 >seq17 Length=585805 Score = 203 bits (224), Expect = 7e-48 Identities = 178/221 (81%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 |||| |||||||| |||||| |||| | ||| ||| || ||||| |||||||||||| Sbjct 274679 ATAGCATATTACACACCTAGAGCAGTGGAGTAAGAAATGTTTCAGATGACATGTAATTGT 274620 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCC 830 || ||||||| ||| | ||||| ||||||||||||||||||||||| | ||||||| || Sbjct 274619 TGGCCGAGGCAAAGTCGAGGTTAACAAACATGTGATCTGAGGCTTTCTTATTTACTGTCC 274560 Query 831 AAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAATGTGGCAACTTTGTTTAGCGC 890 | ||||||||||||||||||| ||||| || ||||| | ||||||||||||| |||| Sbjct 274559 ATAGTGTGTATACTATTTTTCTCCTCGATAGAGGCGGAAAGCGGCAACTTTGTTTCGCGC 274500 Query 891 AGCGGCCAGAAAGTTGTCACTTTCCGGCCGGAGGGCAGAAA 931 |||| | | |||| ||||||||| ||| || ||||| Sbjct 274499 AGCGCC---ACGGTTGCCACTTTCCGCTCGGTGGAGAGAAA 274462 >seq479 Length=3228869 Score = 122 bits (134), Expect = 2e-23 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 798 ACATGTGATCTGAGGCTTTACTTTTTACTGGCCAAGGTGTGTATACTATTTTTCTGCTCG 857 ||| |||||||||||| || | ||||||| || |||||||||||||||||||| ||| Sbjct 2933649 ACAAGTGATCTGAGGCCTTCTTATTTACTGCCCGTGGTGTGTATACTATTTTTCTTCTCA 2933590 Query 858 ACGTAGCCGGAATGTGGCAACTTTGTTTAGCGCAGCGGCCAGAAAGTTGTCACTTTCCGG 917 ||| || || || | | |||||| |||| ||||||||| |||| | ||| ||||||| Sbjct 2933589 ACGGAGGCGAAAAGCGACAACTTCGTTTCGCGCAGCGGGATGAAATTCGTCGCTTTCCGC 2933530 Query 918 CCGGAGGGCAGAAAA 932 ||||||| |||||| Sbjct 2933529 GCGGAGGGGAGAAAA 2933515 >seq246 Length=2929822 Score = 122 bits (134), Expect = 2e-23 Identities = 115/145 (79%), Gaps = 9/145 (6%) Strand=Plus/Plus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 ||||||| || || |||||||||||||| || ||| |||||||| |||||| |||||| Sbjct 1681544 ATAGTATGTTGCACACCTAGGCCAGTAAGGAAAGAAATGTCTCAGATCACATGCAATTGT 1681603 Query 771 TGACCGAGG-CGAAGCCAAGGTTGACAA--ACATGTGATCTGAGGCTTTACTTTTTACTG 827 || |||||| ||||||| |||| ||||||||||||||||||| | || |||| Sbjct 1681604 TGGCCGAGGCCGAAGCC------TACAATTACATGTGATCTGAGGCTTTCTTATTGACTG 1681657 Query 828 GCCAAGGTGTGTATACTATTTTTCT 852 ||| ||| || |||||||||||| Sbjct 1681658 CCCATAGTGCGTTTACTATTTTTCT 1681682 >seq212 Length=2700027 Score = 114 bits (126), Expect = 3e-21 Identities = 103/129 (80%), Gaps = 4/129 (3%) Strand=Plus/Minus Query 804 GATCTGAGGCTTTACTTTTTACTGGCCAAGGTGTGTATACTATTTTTCTGCTCGACGTAG 863 ||||||||||||| | || |||| ||| |||||||||||||||||||| ||||||| || Sbjct 574054 GATCTGAGGCTTTTTTATTAACTGCCCATGGTGTGTATACTATTTTTCTCCTCGACGGAG 573995 Query 864 CCGGAATGTGGCAACTTTGTTTAGCGCAGCGGCCAGAAAGTTGTCACTTTCCGGCCGGAG 923 || ||| | ||||| || |||| |||| | | ||||||| | ||||| | |||||| Sbjct 573994 CCAGAAAGCGGCAATTTGGTTTCGCGC----GAAACAAAGTTGCCGCTTTCTGCCCGGAG 573939 Query 924 GGCAGAAAA 932 || |||||| Sbjct 573938 GGGAGAAAA 573930 >seq2 Length=4278185 Score = 114 bits (126), Expect = 3e-21 Identities = 107/139 (77%), Gaps = 13/139 (9%) Strand=Plus/Plus Query 713 AGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGTTG 772 ||||||||||| ||||||| ||| ||| ||| ||| |||||||| |||||||||||||| Sbjct 895115 AGTATATTACACACCTAGGGCAGCAAAGTAAGAAATGTCTCAGATTACATGTAATTGTTG 895174 Query 773 ACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCCAA 832 |||||||| |||| | ||||||||||||||| | ||||||| ||| Sbjct 895175 GCCGAGGCGTAGCCTA-------------GTGATCTGAGGCTTTTTTATTTACTGTCCAT 895221 Query 833 GGTGTGTATACTATTTTTC 851 ||||||||||| ||||| Sbjct 895222 AGTGTGTATACTGGTTTTC 895240 >seq112 Length=1786610 Score = 100 bits (110), Expect = 6e-17 Identities = 142/206 (69%), Gaps = 29/206 (14%) Strand=Plus/Plus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 || |||||||||| ||||||| || ||| ||| ||| |||||||| ||||||| ||||| Sbjct 1481623 ATGGTATATTACACACCTAGGG-AGCAAAGTAAGAAATGTCTCAGATCACATGTGATTGT 1481681 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCC 830 || |||||||||| ||||| | ||||||| || Sbjct 1481682 TGGCCGAGGCGAA----------------------------GCTTTCTTATTTACTGCCC 1481713 Query 831 AAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAATGTGGCAACTTTGTTTAGCGC 890 | | ||||| ||| |||||| | ||||||| || || || | ||||| || | || || | Sbjct 1481714 ATGTTGTGTTTACCATTTTTTTCCTCGACGGAGGCGAAAAGCGGCAAATTCGCTTCGCTC 1481773 Query 891 AGCGGCCAGAAAGTTGTCACTTTCCG 916 ||||| |||||||| | ||||||| Sbjct 1481774 AGCGGGAGGAAAGTTGCCGCTTTCCG 1481799 Score = 95.1 bits (104), Expect = 2e-15 Identities = 114/160 (71%), Gaps = 25/160 (16%) Strand=Plus/Minus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 ||||||||||||| ||||||| ||||||| || ||| |||||||| |||||||||| || Sbjct 519001 ATAGTATATTACACACCTAGGACAGTAAAGTATGAAATGTCTCAGATCACATGTAATCGT 518942 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTT--TTTACTGG 828 || ||||| |||||||||| || ||| ||||||| Sbjct 518941 TGGCCGAG-----------------------GTGATCTGAGAAATTCCTTACTTTACTGC 518905 Query 829 CCAAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGA 868 || || |||||||||||||||| ||||||| || |||| Sbjct 518904 CCCTGGGTTGTATACTATTTTTCTCCTCGACGGAGGCGGA 518865 >seq496 Length=1672140 Score = 98.7 bits (108), Expect = 2e-16 Identities = 79/94 (84%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 696 ATATGGACAACAGTTATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAG 755 ||||||| || | ||||||||| ||| ||||||| ||||||| ||| ||| ||||| | Sbjct 1645304 ATATGGATAA-ATCAATAGTATATAACACACCTAGGGCAGTAAAGTAAGAAATGTCTCGG 1645246 Query 756 AACACATGTAATTGTTGACCGAGGCGAAGCCAAG 789 | ||||||||||||||| ||||||||||||| || Sbjct 1645245 ATCACATGTAATTGTTGGCCGAGGCGAAGCCGAG 1645212 >seq57 Length=528912 Score = 89.7 bits (98), Expect = 1e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 829 CCAAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAATGTGGCAACTTTGTTTAGC 888 ||| ||||| |||||||||||||| ||| ||| || | || | |||||||| |||| || Sbjct 377672 CCATGGTGTTTATACTATTTTTCTCCTCAACGGAGGTGAAAAGCGGCAACTTAGTTTCGC 377613 Query 889 GCAGCGGCCAGAAAGTTGTCACTTTCCGGCCGGAGGGCAGAAAA 932 ||||||| |||| || | ||||||| |||| ||| |||||| Sbjct 377612 GCAGCGGGACGAAAAATGCCGCTTTCCGCCCGGTGGGAAGAAAA 377569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102623363859480