Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_006650.1 Length=18768 Score E Sequences producing significant alignments: (Bits) Value seq64 152 6e-33 seq10 84.2 3e-12 seq500 80.6 3e-11 >seq64 Length=61265 Score = 152 bits (168), Expect = 6e-33 Identities = 225/310 (73%), Gaps = 8/310 (3%) Strand=Plus/Minus Query 11323 AATTTATTTAGATATTTAAATTAATATTGAATGTTATCAAAATATTATTTTGTGTTGCAT 11382 |||| || | || |||||| | | ||| ||||||| |||| |||||||| | |||| Sbjct 45288 AATTCTTTCAAATTTTTAAAATCACATTTTATGTTATAAAAAAATTATTTT-TATTGCTG 45230 Query 11383 A-CTTTACTTGGCGGCGACGCCTAGGCCCCGAAACGGCCACGCGGAGCCCAAGTTTCAAC 11441 | || | || ||||| ||| ||| ||| ||| |||||||||| | ||||||| Sbjct 45229 AACTATCTTTAGCGGCTGCGCGCGCATGCCGTAACAGCCGCGCGGAGCCCTATTTTCAAC 45170 Query 11442 GTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTAttttact- 11500 || |||| | |||||||||||||| || || | ||||| | | ||||||| ||||| | Sbjct 45169 GTCAAATCAAAATTATAAATAATGAAGATAGAGTTCCGGCAGTTGAGACTT-TTTTATTG 45111 Query 11501 aaaattttctactcttttaggatcttttttcaaatttcagataacttcaatatttttGAA 11560 |||||| || |||||| | || |||||||||| || | || | ||||||||| | Sbjct 45110 GAAATTTCCTCCTCTTTAATGAGATTTTTTCAAAATTGCTAAAATGTTAATATTTTTCGA 45051 Query 11561 GTTATAACTACAAAACGAAGACTCTCtttttttC-TCTTCGTTTTTTGTT-TATAACAAA 11618 ||||| | |||| |||| | || ||||||| || || | ||||||| ||||||| Sbjct 45050 GTTATTGACAAAAAATGAAG--TATCATTTTTTCTTCATCTTATTTTGTTAAATAACAAT 44993 Query 11619 TAAAATTTTT 11628 | ||||||| Sbjct 44992 TGCAATTTTT 44983 Score = 147 bits (162), Expect = 3e-31 Identities = 224/310 (72%), Gaps = 8/310 (3%) Strand=Plus/Minus Query 17851 AATTTATTTAGATATTTAAATTAATATTGAATGTTATCAAAATATTATTTTGTGTTGCAT 17910 |||| || | || |||||| | | ||| ||||||| |||| |||||||| | |||| Sbjct 45288 AATTCTTTCAAATTTTTAAAATCACATTTTATGTTATAAAAAAATTATTTT-TATTGCTG 45230 Query 17911 A-CTTTACTTGGCGGCGACGCCTAGGCCCCGAAACGGCCACGCGGAGCCCAAGTTTCAAC 17969 | || | || ||||| ||| ||| ||| ||| |||||||||| | ||||||| Sbjct 45229 AACTATCTTTAGCGGCTGCGCGCGCATGCCGTAACAGCCGCGCGGAGCCCTATTTTCAAC 45170 Query 17970 GTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTattttact- 18028 || |||| | |||||||||||||| || || | ||||| | | ||||||| ||||| | Sbjct 45169 GTCAAATCAAAATTATAAATAATGAAGATAGAGTTCCGGCAGTTGAGACTT-TTTTATTG 45111 Query 18029 aaaattttctacttttttaggatcttttttcaaatttcagataacttcaatatttttGAA 18088 |||||| || || ||| | || |||||||||| || | || | ||||||||| | Sbjct 45110 GAAATTTCCTCCTCTTTAATGAGATTTTTTCAAAATTGCTAAAATGTTAATATTTTTCGA 45051 Query 18089 GTTATAACTACAAAACGAAGACTCTCtttttttC-TCTTCGTTTTTTGTT-TATAACAAA 18146 ||||| | |||| |||| | || ||||||| || || | ||||||| ||||||| Sbjct 45050 GTTATTGACAAAAAATGAAG--TATCATTTTTTCTTCATCTTATTTTGTTAAATAACAAT 44993 Query 18147 TAAAATTTTT 18156 | ||||||| Sbjct 44992 TGCAATTTTT 44983 >seq10 Length=137715 Score = 84.2 bits (92), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 3/125 (2%) Strand=Plus/Minus Query 11416 CGGCCACGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAAC 11475 ||| | |||||| || ||||||| ||||||| || ||||||||||||||| || | Sbjct 133637 CGGTCGCGCGGATCCGTAGTTTCAGCGTTAAACTATAATTATAAATAATGGGCATAGAGT 133578 Query 11476 TCCGGGAATCGAGACTTAttttact-aaaattttctactcttttaggatcttttt-tcaa 11533 | |||| ||| ||| ||||| | | ||||| || |||||| ||||||||||| ||| Sbjct 133577 TAAGGGAGTCGGGAC-TATTTAATTGGGAATTTCCTCCTCTTTAAGGATCTTTTTCGCAA 133519 Query 11534 atttc 11538 ||||| Sbjct 133518 ATTTC 133514 Score = 80.6 bits (88), Expect = 3e-11 Identities = 95/125 (76%), Gaps = 3/125 (2%) Strand=Plus/Minus Query 11416 CGGCCACGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAAC 11475 ||| | |||||| || ||||||| ||||||| || ||||||||||||||| || | Sbjct 132242 CGGTCGCGCGGATCCGTAGTTTCAGCGTTAAACTATAATTATAAATAATGGGCATAGAGT 132183 Query 11476 TCCGGGAATCGAGACTTAttttact-aaaattttctactcttttaggatcttttt-tcaa 11533 | |||| ||| ||| |||| | | ||||| || |||||| ||||||||||| ||| Sbjct 132182 TAAGGGAGTCGGGAC-TATTCAATTGGGAATTTCCTCCTCTTTAAGGATCTTTTTCGCAA 132124 Query 11534 atttc 11538 ||||| Sbjct 132123 ATTTC 132119 Score = 80.6 bits (88), Expect = 3e-11 Identities = 95/125 (76%), Gaps = 3/125 (2%) Strand=Plus/Minus Query 17944 CGGCCACGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAAC 18003 ||| | |||||| || ||||||| ||||||| || ||||||||||||||| || | Sbjct 133637 CGGTCGCGCGGATCCGTAGTTTCAGCGTTAAACTATAATTATAAATAATGGGCATAGAGT 133578 Query 18004 TCCGGGAATCGAGACTTattttact-aaaattttctacttttttaggatcttttt-tcaa 18061 | |||| ||| ||| ||||| | | ||||| || || ||| ||||||||||| ||| Sbjct 133577 TAAGGGAGTCGGGAC-TATTTAATTGGGAATTTCCTCCTCTTTAAGGATCTTTTTCGCAA 133519 Query 18062 atttc 18066 ||||| Sbjct 133518 ATTTC 133514 >seq500 Length=1338830 Score = 80.6 bits (88), Expect = 3e-11 Identities = 126/171 (74%), Gaps = 7/171 (4%) Strand=Plus/Minus Query 18112 CTCtttttttC-TCTTCGTTTTTTGTTTATAACAAATAAAATTTTTAATGACG-GATAAA 18169 ||||||||| | | ||| ||| ||||| ||||||| | |||||| | || || ||| Sbjct 697829 CTCTTTTTTCCATTTTCATTTCTTGTTCATAACAATTGCTATTTTTCTCGCCGAGAAAAA 697770 Query 18170 TTGAAAAATACACTTTC-TCAGAATTAAATTCTGAATCCAACGCACCAATCGCC-ATATT 18227 || ||| | || |||| ||||||| ||| |||||||| | | | | ||| ||| | Sbjct 697769 TTAAAACA-ACGTTTTCCTCAGAATCGTATTTGGAATCCAATG-AGCTACCGCTTATAAT 697712 Query 18228 TTTAAG-AGCATTGTAACGATTTTTCGCAGAAAACTCATTTCTCGACTAGA 18277 ||| | || ||| |||||||||||||| ||||||| |||| ||||||| Sbjct 697711 TTTTCGTAGAATTAGGACGATTTTTCGCAGGAAACTCAGTTCTTGACTAGA 697661 Score = 80.6 bits (88), Expect = 3e-11 Identities = 126/171 (74%), Gaps = 7/171 (4%) Strand=Plus/Minus Query 11584 CTCtttttttC-TCTTCGTTTTTTGTTTATAACAAATAAAATTTTTAATGACG-GATAAA 11641 ||||||||| | | ||| ||| ||||| ||||||| | |||||| | || || ||| Sbjct 697829 CTCTTTTTTCCATTTTCATTTCTTGTTCATAACAATTGCTATTTTTCTCGCCGAGAAAAA 697770 Query 11642 TTGAAAAATACACTTTC-TCAGAATTAAATTCTGAATCCAACGCACCAATCGCC-ATATT 11699 || ||| | || |||| ||||||| ||| |||||||| | | | | ||| ||| | Sbjct 697769 TTAAAACA-ACGTTTTCCTCAGAATCGTATTTGGAATCCAATG-AGCTACCGCTTATAAT 697712 Query 11700 TTTAAG-AGCATTGTAACGATTTTTCGCAGAAAACTCATTTCTCGACTAGA 11749 ||| | || ||| |||||||||||||| ||||||| |||| ||||||| Sbjct 697711 TTTTCGTAGAATTAGGACGATTTTTCGCAGGAAACTCAGTTCTTGACTAGA 697661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 59938838229466