Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_006653.1 Length=26062 Score E Sequences producing significant alignments: (Bits) Value seq157 118 2e-22 seq80 118 2e-22 seq24 98.7 2e-16 >seq157 Length=387809 Score = 118 bits (130), Expect = 2e-22 Identities = 122/157 (78%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 15335 GCATACTGCGCACCAAAGACAAGTGCCAAAAACATCGCGGATAACGGATTATGACTTAAC 15394 |||||||||||||| |||| ||||| ||||||| || | | ||| | |||||||| | Sbjct 13357 GCATACTGCGCACCGGAGACGAGTGCTGAAAACATGGCAGCTGACGCGTCATGACTTAGC 13416 Query 15395 CTACATGCTGCGCCCATAAttttttttCAATTCATGTGCGCTATTTACATCTTATTAATT 15454 ||||||| ||||||||||| |||| | ||| || ||| |||| | | ||||| || Sbjct 13417 CTACATGTTGCGCCCATAA-TTTTATCCAACAATTGCGCGTTATTCATGTTTTATT-CTT 13474 Query 15455 GTCTGAAAAGCAAAGTCTAAATAGTTGTTTAGCGACA 15491 | || |||| | ||| ||||| ||||||||||||||| Sbjct 13475 GCCTAAAAAACGAAGCCTAAAGAGTTGTTTAGCGACA 13511 >seq80 Length=49696 Score = 118 bits (130), Expect = 2e-22 Identities = 139/190 (73%), Gaps = 21/190 (11%) Strand=Plus/Minus Query 15252 TAGTTATTGGCGTAACTAGTATT---AGGT-TAAGTTGTTTATAATGTGTCAGCGCGATG 15307 ||||||||||||||||||||| | | | ||||| || || | |||||||||||||| Sbjct 39831 TAGTTATTGGCGTAACTAGTAGTCTAACTTGTAAGTCATTCATGACGTGTCAGCGCGATG 39772 Query 15308 TTTTTAGCTTGAGTCGTAGTTGCTCAGGCA-----------------TACTGCGCACCAA 15350 |||| ||| |||||| || | | |||||| ||||||||||| Sbjct 39771 TTTTCAGCACGAGTCGGAGGTTCGCAGGCACGAGCGAAGCGAGTGCATACTGCGCACCGG 39712 Query 15351 AGACAAGTGCCAAAAACATCGCGGATAACGGATTATGACTTAACCTACATGCTGCGCCCA 15410 |||| ||||| |||||||||| | | ||| | |||||||| |||||||| |||||||| Sbjct 39711 AGACGAGTGCTGAAAACATCGCAGTTGACGCGTCATGACTTAGCCTACATGTTGCGCCCA 39652 Query 15411 TAAttttttt 15420 |||||| || Sbjct 39651 CAATTTTATT 39642 Score = 86.0 bits (94), Expect = 1e-12 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 15658 TTTATTACGTCACAAGAGTCGTGATTGTAGCACATTT--ATTGCGTTTTGACATATAATT 15715 || ||||| |||| | || | |||||| | |||| |||| ||| ||||| | ||| Sbjct 30979 TTCATTACTCCACAGTTGCCGAGCTTGTAGAA-ATTTCCATTGAGTTATGACAAGTGATT 30921 Query 15716 TGTCACCAGTCGATAAACGGCCAGTTTGAGTTCAGATTTTAGGTATGTTAATACGTGAAT 15775 ||||||||||| |||||||| | || | |||| | ||||||| | ||| || ||||| Sbjct 30920 -GTCACCAGTCGGTAAACGGCTATTTAGGGTTCGGTTTTTAGGCGCGATAAAACATGAAT 30862 Query 15776 AACACGCATGAGTAGAATAA 15795 | | ||||||||| |||||| Sbjct 30861 AGCGCGCATGAGTTGAATAA 30842 >seq24 Length=1804441 Score = 98.7 bits (108), Expect = 2e-16 Identities = 181/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Minus Query 15542 AATAAAATTCCTGTTAAAAATATTCGGCATTATAATCTTGGCTACTCAATGGATAACT-- 15599 |||||| | | ||| ||||| ||||||||| ||| || || ||||||| |||| Sbjct 1467680 AATAAACTCCATGTCAAAAACATTCGGCATCTCAATTTTAGCA--TCAATGGGTAACAAC 1467623 Query 15600 -GGGAGTTGTAATTACGCACCATCTTGTAGGAGCTT-GAANNNNNNNNNTTTCGTATATT 15657 | ||| ||| |||| ||| || | || | || ||| || ||| ||| Sbjct 1467622 AGAGAGCTGTTGTTACCCACTATTTCGTTACAACTCAGAAAATAG----TTACGTTTATG 1467567 Query 15658 TTTATTACGTCACAAGAGTCGTGATTGTAGCACATTT--ATTGCGTTTTGACATATAATT 15715 || ||||| |||| | || | |||||| | |||| |||| ||| ||||| | ||| Sbjct 1467566 TTCATTACTCCACAGTTGCCGAGCTTGTAGAA-ATTTCCATTGAGTTATGACAAGTGATT 1467508 Query 15716 TGTCACCAGTCGATAAACGGCCAGTTTGAGTTCAGATTTTAGGTATGTTAATACGTGAAT 15775 ||||||||||| |||||||| | || | |||| | ||||||| | ||| || ||||| Sbjct 1467507 -GTCACCAGTCGGTAAACGGCTATTTAGGGTTCGGTTTTTAGGCGCGATAAAACATGAAT 1467449 Query 15776 AACACGCATGAGTAGAATAA 15795 | | ||||||||| |||||| Sbjct 1467448 AGCGCGCATGAGTTGAATAA 1467429 Score = 98.7 bits (108), Expect = 2e-16 Identities = 181/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Plus Query 15542 AATAAAATTCCTGTTAAAAATATTCGGCATTATAATCTTGGCTACTCAATGGATAACT-- 15599 |||||| | | ||| ||||| ||||||||| ||| || || ||||||| |||| Sbjct 1510835 AATAAACTCCATGTCAAAAACATTCGGCATCTCAATTTTAGCA--TCAATGGGTAACAAC 1510892 Query 15600 -GGGAGTTGTAATTACGCACCATCTTGTAGGAGCTT-GAANNNNNNNNNTTTCGTATATT 15657 | ||| ||| |||| || || | || | || ||| || ||| |||| Sbjct 1510893 AGAGAGCTGTTGTTACCAACTATTTCGTTACACCTCAGAAAATAG----TTACGTTTATT 1510948 Query 15658 TTTATTACGTCACAAGAGTCGTGATTGTAGCACATTT--ATTGCGTTTTGACATATAATT 15715 || ||||| |||| | || | |||||| | |||| |||| ||| ||||| | ||| Sbjct 1510949 TTCATTACTCCACAGTTGCCGAGCTTGTAGAA-ATTTCCATTGAGTTATGACAAGTGATT 1511007 Query 15716 TGTCACCAGTCGATAAACGGCCAGTTTGAGTTCAGATTTTAGGTATGTTAATACGTGAAT 15775 ||||||||||| |||||||| | || | |||| | ||||||| | ||| || ||||| Sbjct 1511008 -GTCACCAGTCGGTAAACGGCTATTTAGGGTTCGGTTTTTAGGCGCGATAAAACATGAAT 1511066 Query 15776 AACACGCATGAGTAGAATAA 15795 | | ||||||||| |||||| Sbjct 1511067 AGCGCGCATGAGTTGAATAA 1511086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83279497353150