Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_006660.1 Length=20197 Score E Sequences producing significant alignments: (Bits) Value seq223 113 6e-21 seq483 107 2e-19 seq487 105 9e-19 seq511 86.0 8e-13 >seq223 Length=3708094 Score = 113 bits (124), Expect = 6e-21 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 16804 GTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTC 16863 || ||||| |||||| |||||||| | ||| ||||||| |||| |||||||| || | Sbjct 389592 GTCTTTGAAAGGGTATAAAAGGATAGAAAAGTTTCAGCTGAATCTGAAGGGGTCTGGTTG 389651 Query 16864 AAAAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTA 16900 ||||||||||||||||||||||||| ||||||||||| Sbjct 389652 AAAAGTGGTCGATTTGGCGTGGAATACCCCCTATGTA 389688 Score = 96.9 bits (106), Expect = 4e-16 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 15296 TATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGGCTGA 15355 || |||| ||||||||||||||| ||||||||| | || |||||||| |||| ||||| Sbjct 389684 TAGGGGGTATTCCACGCCAAATCGACCACTTTTCAACCAGACCCCTTCAGATTCAGCTGA 389625 Query 15356 AAGTTTACCATCCTTTTCTACCCTATCAAAAAC 15388 || ||| | |||||||| |||||| ||||| || Sbjct 389624 AACTTTTCTATCCTTTTATACCCTTTCAAAGAC 389592 >seq483 Length=960042 Score = 107 bits (118), Expect = 2e-19 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 16804 GTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTC 16863 |||||| | |||||||||||| |||| ||||| ||||| ||||| ||||||| || || Sbjct 379652 GTTTTTCAAAGGGTAGAAAAGTATGGAAAACTGTCAGCAAAATCTGAAGGGGTAGGGTTC 379711 Query 16864 AAAAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTATA 16902 ||||||||||||||||| || ||| |||| |||||||| Sbjct 379712 AAAAGTGGTCGATTTGGTATGAAATACCCCATATGTATA 379750 Score = 96.9 bits (106), Expect = 4e-16 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 15296 TATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGGCTGA 15355 ||||||| ||| || ||||||| ||||||||||| || ||||||| ||||| ||||| Sbjct 379744 TATGGGGTATTTCATACCAAATCGACCACTTTTGAACCCTACCCCTTCAGATTTTGCTGA 379685 Query 15356 AAGTTTACCATCCTTTTCTACCCTATCAAAAAC 15388 ||||| |||| |||||||||||| | |||||| Sbjct 379684 CAGTTTTCCATACTTTTCTACCCTTTGAAAAAC 379652 >seq487 Length=329773 Score = 105 bits (116), Expect = 9e-19 Identities = 83/98 (85%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 16804 GTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATC-AAAAGGGGTCAGGGT 16862 |||||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||| || | Sbjct 309870 GTTTTTGAAAGGGTAGAAAAGGATGGAAAAGTGTCAGCGAAATCTAAAGGGGGTCGGGTT 309929 Query 16863 CAAAAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTA 16900 || ||||||||||||||| |||||| | || |||||| Sbjct 309930 CAGAAGTGGTCGATTTGGTATGGAATACGCCATATGTA 309967 Score = 98.7 bits (108), Expect = 1e-16 Identities = 79/94 (84%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 15296 TATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTT-GATTTGGCTG 15354 ||||| | |||||| ||||||| ||||||| ||| || |||||| ||| ||||| |||| Sbjct 309963 TATGGCGTATTCCATACCAAATCGACCACTTCTGAACCCGACCCCCTTTAGATTTCGCTG 309904 Query 15355 AAAGTTTACCATCCTTTTCTACCCTATCAAAAAC 15388 | | ||| ||||||||||||||||| |||||||| Sbjct 309903 ACACTTTTCCATCCTTTTCTACCCTTTCAAAAAC 309870 Score = 84.2 bits (92), Expect = 3e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 16819 GAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAGTGGTCGATTT 16878 ||||||||||| ||| | ||||| ||||| |||||||| || | |||||| |||||||| Sbjct 309523 GAAAAGGATGGAAAAGTGTCAGCAAAATCTGAAGGGGTCGGGTTGAAAAGTTGTCGATTT 309464 Query 16879 GGCGTGGAATGCCCCCTATGTATA 16902 | |||||| |||| |||||||| Sbjct 309463 AGTATGGAATACCCCATATGTATA 309440 Score = 82.4 bits (90), Expect = 1e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 16812 TAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAGTGG 16871 |||||||||||| | ||| ||||||| ||||||||| |||| |||| |||| ||| Sbjct 293128 TAGGGTAGAAAAATGTAAAAAAGTTTCAGCACAATCAAAAGAGGTCGGGGTAAAAATTGG 293069 Query 16872 TCGATTTGGCGTGGAATGCCCCCTATGT 16899 || ||||||||| ||||| ||| ||||| Sbjct 293068 TCAATTTGGCGTAGAATGTCCCTTATGT 293041 >seq511 Length=154927 Score = 86.0 bits (94), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 16802 ACGTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGG 16861 |||| ||| |||||||||||| || ||| |||||| ||||| ||||||||| || Sbjct 75422 ACGTCTTTAGTAGGGTAGAAAAA-ATAAAAAAGTTTCAGGAAAATCGAAAGGGGTCGGGT 75364 Query 16862 TCAAAAGTGGTCGATTTGGCGTGGAATGCCCC 16893 || |||||||||| ||||||||||||||||| Sbjct 75363 TCGGAAGTGGTCGAGTTGGCGTGGAATGCCCC 75332 Score = 84.2 bits (92), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 15298 TGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGGCTGAAA 15357 |||||||||||||||||| || ||||||| || || ||||||||| ||||| |||||| Sbjct 75331 TGGGGCATTCCACGCCAACTCGACCACTTCCGAACCCGACCCCTTTCGATTTTCCTGAAA 75390 Query 15358 GTTTACCATCCTTTTCTACCCTATCAAAAACGT 15390 ||| || |||||||||||| ||| |||| Sbjct 75391 CTTTTTTAT-TTTTTCTACCCTACTAAAGACGT 75422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 64511610629760