Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_006661.1 Length=11186 Score E Sequences producing significant alignments: (Bits) Value seq17 185 6e-43 seq246 107 1e-19 seq496 100 2e-17 seq2 98.7 7e-17 seq212 96.9 2e-16 seq112 96.9 2e-16 >seq17 Length=585805 Score = 185 bits (204), Expect = 6e-43 Identities = 172/219 (79%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 10953 TTTCTACCCTCCGACCGGAAAGTGGCAACA------CTGCGGTAAACGAAATTGCCACAT 11006 ||||| || |||| |||||||||||||| ||||| |||| || ||||| | | Sbjct 274462 TTTCTCTCCACCGAGCGGAAAGTGGCAACCGTGGCGCTGCGCGAAACAAAGTTGCCGCTT 274521 Query 11007 TCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAACCCTC 11066 |||| || ||| | ||||||||||||||||||| ||| ||||||| | ||| |||| Sbjct 274522 TCCGCCTCTATCGAGGAGAAAAATAGTATACACACTATGGACAGTAAATAAGAAAGCCTC 274581 Query 11067 AGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGAC 11126 ||| ||||||||||| ||||||||||| |||||||||||||| |||||| |||||| || Sbjct 274582 AGATCACATGTTTGTTAACCTCGACTTTGCCTCGGCCAACAATTACATGTCATCTGAAAC 274641 Query 11127 tttttttATTTTACTGGCCTAGGTATGTGATATACTATT 11165 ||| ||| | |||| |||||| ||| |||| ||||| Sbjct 274642 ATTTCTTACTCCACTGCTCTAGGTGTGTAATATGCTATT 274680 Score = 147 bits (162), Expect = 2e-31 Identities = 111/131 (85%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 6715 ACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAG 6774 |||||| ||| | |||||||||||| |||||| ||||||||||||| | ||||| ||| Sbjct 274665 ACCTAGAGCAGTGGAGTAAGAAATGTTTCAGATGACATGTAATTGTTGGCCGAGGCAAAG 274606 Query 6775 CCGAGGTCAACAAACATGTGGTCTGAGGCTTTCTTATTTACTGTCCAAGATTTGTATGCG 6834 |||||| |||||||||||| |||||||||||||||||||||||||| | ||||| | Sbjct 274605 TCGAGGTTAACAAACATGTGATCTGAGGCTTTCTTATTTACTGTCCATAGTGTGTATACT 274546 Query 6835 ATTTTTCTTCT 6845 |||||||| || Sbjct 274545 ATTTTTCTCCT 274535 >seq246 Length=2929822 Score = 107 bits (118), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 7/146 (5%) Strand=Plus/Minus Query 11023 AGAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAACCCTCAGACCACATGT--TTG 11080 |||||||||||| || ||| ||| |||| || | ||| ||||||| ||||||| ||| Sbjct 1681682 AGAAAAATAGTAAACGCACTATGGGCAGTCAATAAGAAAGCCTCAGATCACATGTAATTG 1681623 Query 11081 TCAACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttATTTTAC 11140 | | ||| | ||||||||||||| ||||||||||||||| ||| || |||| Sbjct 1681622 TAGGCTTCGGC-----CTCGGCCAACAATTGCATGTGATCTGAGACATTTCTTTCCTTAC 1681568 Query 11141 TGGCCTAGGTATGTGATATACTATTT 11166 |||||||||| || | ||||||||| Sbjct 1681567 TGGCCTAGGTGTGCAACATACTATTT 1681542 Score = 102 bits (112), Expect = 6e-18 Identities = 102/129 (79%), Gaps = 5/129 (4%) Strand=Plus/Plus Query 6715 ACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGG-CGAA 6773 ||||||| || ||| | |||||||||||||||||||||| ||||||| | |||| |||| Sbjct 1681558 ACCTAGGCCAGTAAGGAAAGAAATGTCTCAGATCACATGCAATTGTTGGCCGAGGCCGAA 1681617 Query 6774 GCCGAGGTCAACAAACATGTGGTCTGAGGCTTTCTTATTTACTGTCCAAGATTTGTATGC 6833 ||| | ||| ||||||| ||||||||||||||||| |||| ||| | || | | Sbjct 1681618 GCCTA---CAA-TTACATGTGATCTGAGGCTTTCTTATTGACTGCCCATAGTGCGTTTAC 1681673 Query 6834 GATTTTTCT 6842 |||||||| Sbjct 1681674 TATTTTTCT 1681682 >seq496 Length=1672140 Score = 100 bits (110), Expect = 2e-17 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 6715 ACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAG 6774 |||||||||| |||||||||||||||||| ||||||||||||||||| | ||||||||| Sbjct 1645276 ACCTAGGGCAGTAAAGTAAGAAATGTCTCGGATCACATGTAATTGTTGGCCGAGGCGAAG 1645217 Query 6775 CCGAGGTCAA 6784 ||||| |||| Sbjct 1645216 CCGAGTTCAA 1645207 Score = 100 bits (110), Expect = 2e-17 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11086 CTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttATTTTACTGGCC 11145 |||| |||| |||||||||||||| |||||||||| ||||| ||| ||| ||||||| || Sbjct 1645212 CTCGGCTTCGCCTCGGCCAACAATTACATGTGATCCGAGACATTTCTTACTTTACTGCCC 1645271 Query 11146 TAGGTATGTGATATACTATT 11165 ||||| ||| |||||||||| Sbjct 1645272 TAGGTGTGTTATATACTATT 1645291 >seq2 Length=4278185 Score = 98.7 bits (108), Expect = 7e-17 Identities = 98/130 (75%), Gaps = 13/130 (10%) Strand=Plus/Plus Query 6715 ACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAG 6774 |||||||||| ||||||||||||||||||||| ||||||||||||| | |||||| || Sbjct 895127 ACCTAGGGCAGCAAAGTAAGAAATGTCTCAGATTACATGTAATTGTTGGCCGAGGCGTAG 895186 Query 6775 CCGAGGTCAACAAACATGTGGTCTGAGGCTTTCTTATTTACTGTCCAAGATTTGTATGCG 6834 || | ||| ||||||||||| |||||||||||||| | ||||| | Sbjct 895187 CCTA-------------GTGATCTGAGGCTTTTTTATTTACTGTCCATAGTGTGTATACT 895233 Query 6835 ATTTTTCTTC 6844 ||||| || Sbjct 895234 GGTTTTCGTC 895243 Score = 96.9 bits (106), Expect = 2e-16 Identities = 107/144 (74%), Gaps = 14/144 (10%) Strand=Plus/Minus Query 11024 GAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAACCCTCAGACCACATGTTTGTCA 11083 ||||| ||||||||||| ||| ||||||| | ||| ||||||| ||| Sbjct 895240 GAAAACCAGTATACACACTATGGACAGTAAATAAAAAAGCCTCAGATCAC---------- 895191 Query 11084 ACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttATTTTACTGG 11143 | | || | |||||||||||||| |||||| ||||||||| ||| ||| ||| ||| Sbjct 895190 ---TAGGCTACGCCTCGGCCAACAATTACATGTAATCTGAGACATTTCTTACTTTGCTGC 895134 Query 11144 CCTAGGTATGTGATATACT-ATTT 11166 ||||||| ||| ||||||| |||| Sbjct 895133 CCTAGGTGTGTAATATACTGATTT 895110 >seq212 Length=2700027 Score = 96.9 bits (106), Expect = 2e-16 Identities = 95/123 (77%), Gaps = 5/123 (4%) Strand=Plus/Plus Query 10952 TTTTCTACCCTCCGACCGGAAAGTGGCAACACTG-----CGGTAAACGAAATTGCCACAT 11006 |||||| ||||||| | ||||| |||||| || || |||| |||||||| | | Sbjct 573930 TTTTCTCCCCTCCGGGCAGAAAGCGGCAACTTTGTTTCGCGCGAAACCAAATTGCCGCTT 573989 Query 11007 TCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAACCCTC 11066 || |||| ||||| | |||||||||||||||||||| ||| |||| || | ||| |||| Sbjct 573990 TCTGGCTCCGTCGAGGAGAAAAATAGTATACACACCATGGGCAGTTAATAAAAAAGCCTC 574049 Query 11067 AGA 11069 ||| Sbjct 574050 AGA 574052 >seq112 Length=1786610 Score = 96.9 bits (106), Expect = 2e-16 Identities = 118/160 (74%), Gaps = 21/160 (13%) Strand=Plus/Plus Query 11007 TCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAACCCTC 11066 |||| || ||||| | |||||||||||||||| || || ||||||| |||| Sbjct 518865 TCCGCCTCCGTCGAGGAGAAAAATAGTATACAACCCAGGGGCAGTAAA--GTAAG----- 518917 Query 11067 AGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGAC 11126 || ||| ||| || |||||||||||||| || |||||||||||||||| Sbjct 518918 -GAA------TTTCTCA-----GA--TCACCTCGGCCAACGATTACATGTGATCTGAGAC 518963 Query 11127 tttttttATTTTACTGGCCTAGGTATGTGATATACTATTT 11166 ||| || ||||||| ||||||| ||| ||||||||||| Sbjct 518964 ATTTCATACTTTACTGTCCTAGGTGTGTAATATACTATTT 519003 Score = 89.7 bits (98), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11091 CTTCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttATTTTACTGGCCTAGGT 11150 |||| ||||||||||||||||||||||||||||||| ||| ||| ||| || ||||||| Sbjct 1481695 CTTCGCCTCGGCCAACAATCACATGTGATCTGAGACATTTCTTACTTTGCT-CCCTAGGT 1481637 Query 11151 ATGTGATATACTATTTAGC 11169 ||| |||||| |||| || Sbjct 1481636 GTGTAATATACCATTTCGC 1481618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35679790469200