Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_007039.1 Length=17355 Score E Sequences producing significant alignments: (Bits) Value seq19 315 8e-82 >seq19 Length=147286 Score = 315 bits (348), Expect = 8e-82 Identities = 256/316 (81%), Gaps = 3/316 (1%) Strand=Plus/Minus Query 9184 TATTCGCTATGAGTGTGACTGCAGCGCCAGACAAAATATGAACTACGGGAGGCTGTCAGA 9243 ||||||||||||||| ||||||||||||||||||||||| |||||| || |||||||| | Sbjct 58607 TATTCGCTATGAGTGCGACTGCAGCGCCAGACAAAATATAAACTACAGGGGGCTGTCATA 58548 Query 9244 GTATGTTTTCATACGTATGTCAATAGCAAGAAACATAAAANNNNNNNNNNNTTATAANNN 9303 ||||||| ||||||||| ||||||||||||| |||| | |||||| Sbjct 58547 AAATGTTTTTATACGTATGGCAATAGCAAGAAAAATAACAATAAATAAATATTATAAATA 58488 Query 9304 NNNNNNNNNAAAAA--GTTGTCAAAAGTATGTGACAGTTTTATAGTAATTGCAGTTTTGT 9361 ||||| ||| | |||| ||||||| | |||| || | ||||||||||||| Sbjct 58487 ATAGTAAAAAAAAAAAGTTATAAAAAATATGTGAGACTTTTGTAATGATTGCAGTTTTGT 58428 Query 9362 TTTTTAGCTAAACGAACCAACAATAAGTAAGTATAATGATaaaaaataaaaaaGATTGCA 9421 |||||| |||||||| |||||| ||||||||||||||||||||||||| ||||| |||| Sbjct 58427 TTTTTAATTAAACGAATCAACAACAAGTAAGTATAATGATAAAAAATAATAAAGAATGCA 58368 Query 9422 GTAAGCATTTAGGTTAAGTTGTTTGAAATTCATATCAAAGTCAAAATATGATACTAAGGA 9481 |||| |||||||||| |||| ||||| ||| ||||||||||||||| |||||||| | | Sbjct 58367 GTAAACATTTAGGTTCAGTTATTTGATATTTATATCAAAGTCAAAAAATGATACTTA-TA 58309 Query 9482 AAAAATCAAAATGAAA 9497 |||||| ||||||||| Sbjct 58308 AAAAATTAAAATGAAA 58293 Score = 154 bits (170), Expect = 2e-33 Identities = 106/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 9529 CTTTCATGTGTGCTTGCTTACAATTTCAGTAATCATAGCCTCCCGTAACTCCGAAAGTAA 9588 || ||| || || |||| |||||||| |||||| |||||| |||||||| |||||||||| Sbjct 54187 CTCTCACGTATGATTGCGTACAATTTTAGTAATAATAGCCCCCCGTAACACCGAAAGTAA 54128 Query 9589 CCACTGCAAACGCTTCAGTCAATTTGATTTCCCCTACCATGGCTTCACTCAGAGCGAATA 9648 ||||||| ||||||| |||| |||| ||||||||||||||||||||||||| |||||||| Sbjct 54127 CCACTGCGAACGCTTTAGTCGATTTAATTTCCCCTACCATGGCTTCACTCACAGCGAATA 54068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 55417265520148