Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq223 125 7e-24 >seq223 Length=3708094 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| |||||||| || | |||||| | ||| | || | | Sbjct 239843 ATGCAAATTTTTGTGAAAACGTTAACTGGTAAGACCATCACCTTGGAAGTCGAGGCCTCC 239902 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| ||| || ||||||||||| || || || |||||| Sbjct 239903 GACACCATCGAAAACGTCAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAA 239962 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | | ||| ||||| | ||||||| | | | | | |||||| || Sbjct 239963 CAAAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAAT 240022 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| ||||||||| | || |||| || Sbjct 240023 ATTCAAAAGGAATCTACTCTTCACTTGGTTCT 240054 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || ||||| || || || || ||| | |||||| | || | ||| || | Sbjct 241186 ATGCAAATCTTCGTAAAGACTTTGACCGGTAAAACCATCACCCTGGAGGTTGAAGCATCC 241245 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || ||| |||||| ||||| || || || || || || || Sbjct 241246 GACACCATCGAGAACGTGAAAGCAAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 241305 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | || ||| || ||| | ||||||| | | | | ||||| ||| Sbjct 241306 CAAAGATTGATCTTCGCCGGAAAGCAATTGGAAGATGGGCGTACCTTGTCGGACTACAAC 241365 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || ||||| || ||||||| ||||| ||||| |||| || Sbjct 241366 ATTCAGAAGGAATCCACACTCCATCTTGTCCTCAGACTGCGAGGTGG 241412 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| ||||||| ||| | |||||| | ||| | ||| || Sbjct 241414 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACCCTGGAAGTTGAAGCATCG 241473 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || ||| || ||| ||||||||||| || || || || ||| Sbjct 241474 GACACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATTCCGCCAGACCAA 241533 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | | ||||||||| || || |||| | | | | | |||||| ||| Sbjct 241534 CAGCGTCTCATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACCCTGTCCGACTACAAC 241593 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| || ||||| |||| ||| | || |||| || Sbjct 241594 ATCCAGAAAGAATCAACCCTCCATTTGGTTCTGCGGCTCCGAGGTGG 241640 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| |||||||| || | |||||| | ||| | ||| | Sbjct 240071 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAGACCATCACCTTGGAAGTCGAAGCTTCT 240130 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || |||||| || |||||||| || || || || ||| Sbjct 240131 GACACCATTGAGAATGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCCCCAGACCAA 240190 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | || || ||||| | ||||||| | | | | | |||||||||| Sbjct 240191 CAAAGATTAATCTTCGCGGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAC 240250 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || ||||| || | ||| |||| || Sbjct 240251 ATTCAGAAGGAATCCACCTTGCATTTGGTTCT 240282 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || ||||| || || | |||||| | ||| | ||| | | Sbjct 239615 ATGCAGATTTTTGTGAAGACTTTAACCGGTAAGACTATCACCTTGGAAGTCGAAGCCTCC 239674 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||||| |||||||| || || || || || || Sbjct 239675 GACACCATCGAAAATGTGAAGGCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAG 239734 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | |||| | ||||||||||| ||||||| | | | | ||| || ||| Sbjct 239735 CAGAGATTGATTTTTGCTGGCAAACAACTAGAAGATGGGCGCACCTTGTCCGATTACAAC 239794 Query 26949 ATTCAAAAAGAATCTAC 26965 |||||||| ||||| || Sbjct 239795 ATTCAAAAGGAATCCAC 239811 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || ||||| || || || ||||| | || ||| | ||| | ||| | | Sbjct 239159 ATGCAAATATTCGTAAAGACCTTGACCGGAAAGACAATTACCTTGGAAGTCGAAGCCTCC 239218 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | ||||| || ||| ||||||||||| || || || |||||| Sbjct 239219 GATACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAAGAAGGAATCCCACCAGATCAA 239278 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | | ||| |||||| | || |||| | | | | |||||| ||| Sbjct 239279 CAGCGTCTTATCTTTGCCGGTAAACAATTGGAGGATGGCCGTACCTTGTCCGACTACAAC 239338 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||||||| |||| |||| || Sbjct 239339 ATCCAAAAGGAATCTACTCTCCACTTGGTTCT 239370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478659276727840