Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq223 114 1e-20 >seq223 Length=3708094 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||||||||| || || || ||||| || ||| | ||| ||| || Sbjct 239386 AATGCAAATTTTTGTCAAAACTCTTACCGGTAAAACAATCACCTTGGAAGTCGAGGCCTC 239445 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| | | || || ||| ||| |||||||||||| ||||| || || Sbjct 239446 CGACACCATTGAAAACGTTAAGGCAAAGATTCAGGATAAAGAAGGCATCCCCCCAGACCA 239505 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | |||| || |||||||| || ||||||| ||| || | || || || Sbjct 239506 ACAAAGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTCGCACCTTGTCTGACTACAA 239565 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || || |||||| | ||| | || | | |||| ||||| Sbjct 239566 TATCCAGAAGGAATCTACTCTTCATTTAGTTCTCCGTCTGCGTGGAGG 239613 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| |||||| | || || || ||||| ||| | ||| ||| || | Sbjct 239843 ATGCAAATTTTTGTGAAAACGTTAACTGGTAAGACCATCACCTTGGAAGTCGAGGCCTCC 239902 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | || ||| |||||| || |||||||| | ||| ||||| Sbjct 239903 GACACCATCGAAAACGTCAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAA 239962 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | || | ||| || ||||| || ||||||| ||| || |||| || || Sbjct 239963 CAAAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAAT 240022 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||| || |||||| | || |||| Sbjct 240023 ATTCAAAAGGAATCTACTCTTCACTTGGT 240051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| | || || || ||||| ||| | ||| || | Sbjct 240071 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAGACCATCACCTTGGAAGTCGAAGCTTCT 240130 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || ||| ||||||||||| ||||| || || Sbjct 240131 GACACCATTGAGAATGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCCCCAGACCAA 240190 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | || | ||||| ||||| || ||||||| ||| || |||| |||||| Sbjct 240191 CAAAGATTAATCTTCGCGGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAC 240250 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||| || || || || | ||| |||| Sbjct 240251 ATTCAGAAGGAATCCACCTTGCATTTGGT 240279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425341294014640