Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 163 4e-35 seq142 91.5 2e-13 >seq2 Length=4278185 Score = 163 bits (180), Expect = 4e-35 Identities = 170/221 (77%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 63484 GGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63543 ||| || |||||||||||||| ||||||| || | ||||||||| |||||||||||| Sbjct 517526 GGTGGGGGAAGCGTGAGTAAAATATTTTTCTGACAATAGATTGTAAGTCTCAATAGCTTT 517585 Query 63544 GTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63601 ||| |||| ||| | |||||| || |||||||| |||||||| | ||||| |||||| Sbjct 517586 GTCGATAT--CATCGCCATGAATACCAACTGCGACGCGCATTAATAAATGCTGCGGTCTT 517643 Query 63602 TCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63661 ||||| | ||| || ||||||| |||||| | |||| ||||| || |||||| Sbjct 517644 TCAACCACTTTGCCATTAATTTTCAGCAAGTAACTTCGCTCCAGGGTTTTGAATCCAAAA 517703 Query 63662 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702 ||||| || |||||||| || |||||||| | ||||| Sbjct 517704 TAGTTATAGTTGAAGTCTCGATCATAAATAATGGCAGAGTT 517744 Score = 138 bits (152), Expect = 1e-27 Identities = 239/344 (69%), Gaps = 5/344 (1%) Strand=Plus/Plus Query 62591 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62650 ||||||||||||||||||||| |||| || |||| ||||||||||| ||||| || || Sbjct 516340 ATACCGATAGGTCTATGTCTCATATTGGATCTTTCGGCTTCTGGAATTGGATAGTAGTTG 516399 Query 62651 ATATCTATAATTTTATT-GAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAG 62709 ||||| || ||||| || || | | || ||| | |||| ||| || || ||||| Sbjct 516400 ATATCGATGATTTTGTTCAAGTTATATG-CAACAATTTTGGTCACTTCTTTTAGTTTTTT 516458 Query 62710 AAAATCAAATCGCCCATCT---ATTACAAACATGTTCAATGCAACAGATGCCAGATTACA 62766 |||| | | |||| | ||||||||||| | |||| ||||| ||||| || Sbjct 516459 GAAATTGTAGGTCTTATCTGGGTTCACAAACATGTTGACAGCAATCGATGCAAGATTGCA 516518 Query 62767 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 62826 ||| || | |||| | | ||||| || || || || ||||| || || || || Sbjct 516519 AACCGCGATTTCATCGGGGCTGGAATATTCTACAATTTCGGTACAAAGGTTGCTGCATTT 516578 Query 62827 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 62886 || ||||| | ||| || ||||| || ||||| ||| ||||| || ||| | Sbjct 516579 AATAGTTCCAACATTCTGCTGATTGGATTTGCGATTACAGTGATCTTTATACAGCATGTA 516638 Query 62887 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 62930 || || || || |||| ||| || | |||||| ||| ||||| Sbjct 516639 AGGTGTTCCGGTCTCAACCTGTGAGTTTATAATGGCTAACCAGA 516682 >seq142 Length=137952 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || || | |||||||||||| || |||||||| || || ||||| || || ||||| ||| Sbjct 56793 TTTGAGAGATCCACTTCTTCAACAGTCCAAAAAGAAGCTTCTGCTTTCTTGTACATTTTC 56734 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATT 33266 || ||||| | |||| ||||| |||||||| || | ||||||||| | || | | Sbjct 56733 CAAATGTCTGGCCATTGGATTGGGAAAATAACGAAGCGTCTTGGATTTTCTCTCAGCAAT 56674 Query 33267 GGTTC 33271 ||||| Sbjct 56673 GGTTC 56669 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 |||||||| ||| | ||| ||| || || || || ||||| || || || || || Sbjct 57450 TCGTCTCTGGAAATGAGTTCATTGCTGAAAGTTAGCCCAGGCATAAGTCCGCGTTTCTTC 57391 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 32804 ||||| ||||||| ||||| || || || |||||||||||||| |||||||| Sbjct 57390 AGCCAGAATATGGCAGCAAAACTACCGCTGAAAAAGATTCCTTCTACTGCTGCAAAGGCC 57331 Query 32805 ATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCC 32861 | | || ||||||| || || || ||||| ||||| ||| ||||| | || Sbjct 57330 ACGACTCGCTCTCCAAAATTTGCACTATCATGATTGATCCAATTTATTGCCCAGTTAGCT 57271 Query 32862 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 32907 || ||| |||||||| | |||| || ||||| || | | ||| Sbjct 57270 TTTTTTGCGACACAAGGTAGGTTCTCGATGGCATTGAACAAAAAGT 57225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633627865551200