Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq223 152 4e-32 seq496 107 2e-18 seq257 102 7e-17 >seq223 Length=3708094 Score = 152 bits (168), Expect = 4e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||||||||||||||| ||||||| | ||||| || | || Sbjct 240730 ATGCAGATTTTTGTCAAAACTTTGACCGGTAAAACCATCACCCTGGAAGTTGAAGCATCC 240789 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| |||| || ||| |||||||| ||||||||||| |||||| Sbjct 240790 GACACCATTGAGAACGTGAAAGCGAAGATCCAGGACAAAGAGGGGATTCCACCAGACCAA 240849 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| ||||| || || || ||||||| |||||| || ||| || ||| Sbjct 240850 CAGCGATTAATTTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAT 240909 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || || || || || || Sbjct 240910 ATTCAAAAGGAATCTACCCTCCACTTGGTTCT 240941 Score = 145 bits (160), Expect = 7e-30 Identities = 163/216 (75%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || || || ||||| ||||||| | ||||| ||| | || Sbjct 239843 ATGCAAATTTTTGTGAAAACGTTAACTGGTAAGACCATCACCTTGGAAGTCGAGGCCTCC 239902 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| ||||||||| || ||||||||||| ||||| || || Sbjct 239903 GACACCATCGAAAACGTCA---AAGCAAAAATCCAG-GACAAAGAAGGAATTCCCCCAGA 239958 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | || |||||||| ||||| || ||||||| |||||| || ||| || Sbjct 239959 TCAACAAAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTA 240018 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||| ||||| || || || || || || Sbjct 240019 CAATATTCAAAAGGAATCTACTCTTCACTTGGTTCT 240054 Score = 140 bits (154), Expect = 3e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| ||||| || ||| | || || | ||||| ||| | || Sbjct 238930 AATGCAGATCTTCGTTAAGACATTGACGGGCAAAACTATTACTCTGGAAGTAGAGGCCTC 238989 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| ||||| |||| || |||| ||| ||||||||||| || || || || | Sbjct 238990 TGACACGATCGAAAATGTGAAAGCTAAAATTCAG-GACAAAGAAGGAATCCCGCCAGATC 239048 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| |||| |||||||||||||| | || |||| |||||| || || |||| Sbjct 239049 AGCAGCGTCTTATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACGTTGTCGGACTACA 239108 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| || ||||||||||| || || || || Sbjct 239109 ATATTCAGAAGGAATCCACGCTGCACTTGGTTCT 239142 Score = 136 bits (150), Expect = 3e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | ||||||||| | ||||| | ||||| ||| | || Sbjct 239386 AATGCAAATTTTTGTCAAAACTCTTACCGGTAAAACAATCACCTTGGAAGTCGAGGCCTC 239445 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | ||| |||| | ||| || |||||||| || || || |||| Sbjct 239446 CGACACCATTGAAAACGTTAAGGCAAAGATTCAG-GATAAAGAAGGCATCCCCCCAGACC 239504 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | ||||| ||||||||||| || ||||||| |||||| || || |||| Sbjct 239505 AACAAAGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTCGCACCTTGTCTGACTACA 239564 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || || ||||| || || |||||||| || Sbjct 239565 ATATCCAGAAGGAATCTACTCTTCATTTAGTTCT 239598 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| |||||||| |||||||| || | || || | ||||| || | || Sbjct 239159 ATGCAAATATTCGTAAAGACCTTGACCGGAAAGACAATTACCTTGGAAGTCGAAGCCTCC 239218 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || |||| | || |||| ||| ||||||||||| || ||||| || Sbjct 239219 GATACTATTGAAAATGTCA---AGGCTAAAATTCA-GGACAAAGAAGGAATCCCACCAGA 239274 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| |||| |||||||| |||||||| || |||| || || || ||| || Sbjct 239275 TCAACAGCGTCTTATCTTTGCCGGTAAACAATTGGAGGATGGCCGTACCTTGTCCGACTA 239334 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || ||||| ||||| || || || || || || | ||| | || |||| Sbjct 239335 CAACATCCAAAAGGAATCTACTCTCCACTTGGTTCTTCGTCTACGTGGTGGAA 239387 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || || ||| ||||||| | ||||| || | || Sbjct 241414 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACCCTGGAAGTTGAAGCATCG 241473 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || |||| || |||| ||| ||||||||||| ||||| || ||||| Sbjct 241474 GACACCATTGAAAATGTGAAAGCTAAAATTCAG-GACAAAGAAGGAATTCCGCCAGACCA 241532 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || |||||||||||||| | || |||| |||||| || ||| ||||| Sbjct 241533 ACAGCGTCTCATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACCCTGTCCGACTACAA 241592 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||| || || ||||| || || |||| |||| || Sbjct 241593 CATCCAGAAAGAATCAACCCTCCATTTGGTTCTGCGGCTCCGAGGTGG 241640 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||||||||||||||||||| ||||||| | || || || | || Sbjct 241186 ATGCAAATCTTCGTAAAGACTTTGACCGGTAAAACCATCACCCTGGAGGTTGAAGCATCC 241245 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| |||| ||| ||| ||||| || || || ||||| ||||| Sbjct 241246 GACACCATCGAGAACGTGAAAGCAAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 241305 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || || ||||| || ||||| ||||||| || || || || ||||| Sbjct 241306 CAAAGATTGATCTTCGCCGGAAAGCAATTGGAAGATGGGCGTACCTTGTCGGACTACAAC 241365 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || |||||||| || ||| | || || || || |||| || Sbjct 241366 ATTCAGAAGGAATCCACACTCCATCTTGTCCTCAGACTGCGAGGTGG 241412 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||||||||||||||| || ||||||| |||| || || | || Sbjct 238703 ATGCAGATCTTCGTAAAGACTTTGACCGGCAAGACCATCACTCTCGATGTCGAAGCTTCC 238762 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||| || ||| ||||| || || || ||||| ||||| Sbjct 238763 GATACGATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 238822 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || |||||||| || ||||| ||||||| ||||| | || ||||| Sbjct 238823 CAGAGACTGATCTTTGCCGGAAAGCAATTGGAAGATGGCCGCACCCTTTCGGACTACAAC 238882 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || ||||| || || Sbjct 238883 ATCCAGAAAGAATCCACCCTTCATTTGGTCCT 238914 >seq496 Length=1672140 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| |||| |||||| ||||||| | || |||||| | Sbjct 1564475 ACGATGCAGATCTTCGTGAAGACCCTGACGGGTAAAACCATCACCCTTGAGGTGGAGGCT 1564534 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || | ||| || ||| ||||| ||||| ||||||||||| Sbjct 1564535 TCCGATACTATTGAAAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCTGAT 1564594 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || ||||| || |||||| ||||||||| ||| ||| | || ||| Sbjct 1564595 CAGCAGAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGTCGTACTCTCTCTGACTAC 1564654 Query 25176 AATATTCAAAA-----AGAATCCA 25194 ||||| || || |||||||| Sbjct 1564655 AATATCCAGAAGGGTGAGAATCCA 1564678 >seq257 Length=1448838 Score = 102 bits (112), Expect = 7e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||||||||| ||||| ||||| ||| | |||||||||||||| ||| | || |||| | Sbjct 383173 AGGGATTCCCCCTGATCAACAACGGTTGATTTTTGCCGGCAAGCAACTTGAGGATGGAAG 383114 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| | ||||||||| || || |||||||||||||| ||||| ||||| Sbjct 383113 AACTCTTTCCGATTACAACATCCAGAAAGAATCCACGCTCCATTTGGTGCT 383063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325243221430