Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq142 136 4e-27 seq86 113 5e-20 seq490 111 2e-19 >seq142 Length=137952 Score = 136 bits (150), Expect = 4e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 ||||||||| || || | ||||||||||| |||| || || | ||||| ||||||| Sbjct 57452 CTTCGTCTCTGGAAATGAGTTCATTGCTGAAAGTTAGCCCAGGCATAAGTCCGCGTTTCT 57393 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | ||||| ||||| | |||||||||||| ||||| || ||||| || |||||||| | Sbjct 57392 TCAGCCAGAATATGGCAGCAAAACTACCGCTGAAAAAGATTCCTTCTACTGCTGCAAAGG 57333 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 |||| | || || |||||||||| || | ||||||| |||| ||||| | | Sbjct 57332 CCACGACTCGCTCTCCAAAATTTGCACTATCATGATTGATCCAATTTATTGCCCAGTTAG 57273 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||||||| | ||||||||| | ||||| || || || Sbjct 57272 CTTTTTTTGCGACACAAGGTAGGTTCTCGATGGCATTGAA 57233 Score = 104 bits (114), Expect = 3e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 ||||| ||||| |||||||| ||||||||||| || ||||||||||| |||||||| | | Sbjct 56793 TTTGAGAGATCCACTTCTTCAACAGTCCAAAAAGAAGCTTCTGCTTTCTTGTACATTTTC 56734 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || |||||| | |||| ||||| || || || || || | || || ||| | || || Sbjct 56733 CAAATGTCTGGCCATTGGATTGGGAAAATAACGAAGCGTCTTGGATTTTCTCTCAGCAAT 56674 Query 93701 GGCTCTAGTT 93710 || || |||| Sbjct 56673 GGTTCAAGTT 56664 >seq86 Length=190020 Score = 113 bits (124), Expect = 5e-20 Identities = 75/81 (93%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGA 126320 |||| |||||||||||| |||||||||||||||||||||| |||||||||| || |||| Sbjct 106663 ACAGCTAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTCAGGGA 106604 Query 126321 GCGTGGGTTCGAACCCCACAC 126341 ||||||||||||||||||||| Sbjct 106603 GCGTGGGTTCGAACCCCACAC 106583 >seq490 Length=1461854 Score = 111 bits (122), Expect = 2e-19 Identities = 76/83 (92%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGA 126320 |||| |||||||||||| |||||||||||||||||||||| | |||||||| || |||| Sbjct 839985 ACAGCTAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTTTGGTTCCCGTCAGGGA 840044 Query 126321 GCGTGGGTTCGAACCCCACACCT 126343 ||||||||||||||||||||||| Sbjct 840045 GCGTGGGTTCGAACCCCACACCT 840067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857166483280