Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_008952.1 Length=4063 Score E Sequences producing significant alignments: (Bits) Value seq501 187 6e-44 >seq501 Length=2515403 Score = 187 bits (206), Expect = 6e-44 Identities = 156/190 (82%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 59 TTGGAATCGCAACAGCGTACGGTGCATAATTCCTAGATGCAGCTTCAGCTGTGAGTAGGA 118 |||||| | || | |||||||||||||||||||||||||||| |||| || || ||||| Sbjct 1368748 TTGGAACAG-AATAACGTACGGTGCATAATTCCTAGATGCAGCATCAGGTGAGAATAGGA 1368806 Query 119 GTTTTGCCGTTGCAATGTCAACCCAATGCACCAGGATGCATTTGACTCAAAGTGCAGTTG 178 ||| | | |||||||||||||| |||||| |||||||||| |||| | |||||||| Sbjct 1368807 ATTTCGACATTGCAATGTCAACCTAATGCATTGAGATGCATTTGGCTCAGAATGCAGTTG 1368866 Query 179 AATTTTTTCACCGCAAACGGTGCTCGCTAGCCTCCGGGTACGCTTGTAGATGAAGTCTAG 238 |||||||||||| |||| | || ||| ||||||| || |||||| | ||| | |||||| Sbjct 1368867 AATTTTTTCACCACAAATGATGGTCGTCAGCCTCCTGGCACGCTTCTGGATAAGGTCTAG 1368926 Query 239 GCATAAATCT 248 |||| ||||| Sbjct 1368927 GCATGAATCT 1368936 Score = 140 bits (154), Expect = 8e-30 Identities = 153/205 (75%), Gaps = 20/205 (10%) Strand=Plus/Plus Query 3877 TGCAGATATAAGCGTCACGCTGCAACTGGTGCA------ACTGCACTCTAATGGGTCGAG 3930 |||||||||| |||| ||||||||||| ||||| |||||||||| |||||||||| Sbjct 1371737 TGCAGATATAGGCGTTACGCTGCAACTCGTGCAGCAGCTACTGCACTCTGATGGGTCGAG 1371796 Query 3931 CAAAACGGCCTAGGAGTTAACACCATTGCATGATAGAGTTTTGTCTCCTGATTTCAAAAA 3990 | ||||| ||||| || ||| | |||||||||||||| ||||||||||||||||| | Sbjct 1371797 CGTGACGGCTTAGGAATTGACATCGATGCATGATAGAGTTGTGTCTCCTGATTTCAAACA 1371856 Query 3991 TA-------------CCACCCTCCGCTACCCCCGAGCCTTAACTTTGAAGATACAGCCCG 4037 || || ||| |||||| ||| ||||| ||| | |||| || ||||| Sbjct 1371857 TACTGTCCCCCCCCCCCCCCCCCCGCTA-CCCAGAGCCCTAATTCCGAAGTTATAGCCCT 1371915 Query 4038 TACGATATCATGAAATTCACTGTAT 4062 |||| | | || || | ||||||| Sbjct 1371916 TACGTTCTTGTGTAACTGACTGTAT 1371940 Score = 95.1 bits (104), Expect = 3e-16 Identities = 143/204 (70%), Gaps = 22/204 (11%) Strand=Plus/Plus Query 2562 TGCAGATGTAGGCGTCATGCTGCAACTTGTGCA------ACTGCACTCTAACGGGTCGAG 2615 ||||||| ||||||| | ||||||||| ||||| |||||||||| | |||||||| Sbjct 1371737 TGCAGATATAGGCGTTACGCTGCAACTCGTGCAGCAGCTACTGCACTCTGATGGGTCGAG 1371796 Query 2616 CGTAACGGCCTAGCCGTTAGCATGGTTTCATGGCAGAGCTTTGTCGCCTGATTTCAAGAA 2675 ||| ||||| ||| || ||| | | |||| |||| | |||| ||||||||||| | Sbjct 1371797 CGTGACGGCTTAGGAATTGACATCGATGCATGATAGAGTTGTGTCTCCTGATTTCAAACA 1371856 Query 2676 -------------CACCAACCCCCGCTACCCCTGAGCCTTAACTTTTGAGTTATAGTAGT 2722 | || ||||||||| ||| ||||| ||| | |||||||| | Sbjct 1371857 TACTGTCCCCCCCCCCCCCCCCCCGCTA-CCCAGAGCCCTAATTCCGAAGTTATAGCCCT 1371915 Query 2723 AGTGCGTGCTTGTGTCACTGACTG 2746 | ||| ||||||| |||||||| Sbjct 1371916 --TACGTTCTTGTGTAACTGACTG 1371937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12889526408440