Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 4e-14 >seq2 Length=4278185 Score = 87.8 bits (96), Expect = 4e-14 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 3343 CGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTG 3402 ||||| ||||| | | |||| || || || |||||||| ||| |||| || | | Sbjct 1066140 CGAGTTTTTCCCAAAGTCACCAAGTGCACCTTCCACAAATATGGTGCTTCTGGTACAATA 1066081 Query 3403 GAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATT 3462 | || | ||| ||||||||| | || || |||| | || ||||||||||| ||| | Sbjct 1066080 CAGAAATTCGACGGACTCTGCGTTCTACCCCTGAACATCGTTAACGAGAAGATATACGTC 1066021 Query 3463 TTCCTCTGGTTCTGGTTCTACGTGCTAGCCATCATCAGCGG 3503 ||||| |||||||||||| | | || ||| || | ||||| Sbjct 1066020 TTCCTTTGGTTCTGGTTCATCATCCTTGCCGTCCTGAGCGG 1065980 Score = 77.0 bits (84), Expect = 8e-11 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 3421 TGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||||| || ||||||||||||||||||||||||| ||||||| ||||| |||||| Sbjct 1008278 TGCATCCTTCCATTGAACGTGGTCAACGAGAAGATCTACGTTTTCCTTTGGTTTTGGTTC 1008219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479928747000