Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_008954.1 Length=4351 Score E Sequences producing significant alignments: (Bits) Value seq501 517 3e-143 >seq501 Length=2515403 Score = 517 bits (572), Expect = 3e-143 Identities = 636/870 (73%), Gaps = 33/870 (4%) Strand=Plus/Minus Query 1714 GCCAGCAACTAAAGTTTCATCTTCAGCGCCCAAATGTACCGTCAAGACTGNNNNNNNNNN 1773 ||||||||| |||||||||||||||||||| |||| ||||| |||| ||| Sbjct 1370458 GCCAGCAACAAAAGTTTCATCTTCAGCGCCAAAATCTACCGGCAAGCCTGCTG------- 1370406 Query 1774 NNAGAGCCCCTCGGTGTTAACCAGTGCTGCTGATAAAGTGATTTTCTGGAGTGAAATAAT 1833 ||| || ||| | || ||||||||||||||| || |||| ||||||| ||| | Sbjct 1370405 --AGAACCTCTCAGAGTCTACCAGTGCTGCTGATGAAAGCATTT---GGAGTGATATATT 1370351 Query 1834 ACATTGTGACTTCAAGTCGACCAACTTTATCAAGTTATTGGAANNNNNNNNATTCAGTGA 1893 | || |||| ||||||||| | || |||| || ||||||| | |||| ||| Sbjct 1370350 AGATAGTGATTTCAAGTCGCCTAAGTTTACCATGTTATTGAA---GAATAAATTCCCTGA 1370294 Query 1894 AGAACAAATCGAGATGTTGAAGCAATCATTTGCGCATTTGACTCGAGCCTTTCATCGCAG 1953 ||||||| ||||| | | |||||||| |||| || |||| ||| ||||||| Sbjct 1370293 AGAACAAGTCGAGGCTATACAAAAATCATTTCAGCATCTGTGTCGAATGTTTTATCGCAG 1370234 Query 1954 GCCCACAAAACCTCTCCGTTTCATGAAAACATATGAATGTATAGAATGTAATTTTTCAAT 2013 ||| |||||| | | || |||||||| | |||| |||||||||||| ||| |||||| Sbjct 1370233 GCCGACAAAATGTAATCCTTCCATGAAAATACATGAGTGTATAGAATGTCATTATTCAAT 1370174 Query 2014 ATCTCACGAGTGCTTGGCTATCGATACTACGCGATACTGGACCTTTGGCGGTAACGCTCC 2073 |||||| |||||| | || ||| |||||| ||||||||||| ||||||||||| ||| Sbjct 1370173 ATCTCATGAGTGCCCTCCCATGGATTCTACGCAATACTGGACCTCTGGCGGTAACGATCC 1370114 Query 2074 ATGTATACATTTTATCAGACCCGAGTCAACAACCATGTGCGCCTGTGATTTTACCATCTT 2133 || ||| |||| ||||| || ||| || |||||||||| |||| |||| |||||||| Sbjct 1370113 ATATATGGATTTGATCAGGCCTGAGGTAATAACCATGTGCCTCTGTAATTTCACCATCTT 1370054 Query 2134 TCATTCTCACTTTTCAAAATCAAAGTCCAAGCGTGCCGAC------CCTGTGCCGAGTTG 2187 |||||||||| | || ||||||||||||| | |||| || |||| Sbjct 1370053 TCATTCTCACAACGTACAACAGAAGTCCAAGCGTGGAGCTAATTCGCCTGAGCGGAGTCC 1369994 Query 2188 TTCACCGAGTACCTTGCCTGGCGTAAAAGTAAATTTATCTGTGAACTTGCAATGTTACAA 2247 || |||||| || |||| ||| || | | || ||| | ||| | ||| ||| Sbjct 1369993 TTTACCGAGGCTCTCGCCTTTGGTAGAAAATAGTCGTTCCGTGGAATTGAACTGTCCCAA 1369934 Query 2248 GTGCGCGACGACTTTATCCATGAAAAACCCGCCCAATGCCGCTTGCGCCGACATGAGCAA 2307 |||| | || | || |||| | ||||| | || | ||||| ||||| ||| || Sbjct 1369933 GTGCTACATGAATGTAACCATAACAAACCGGAATAAGGAACCTTGCTCCGACCTGATGAA 1369874 Query 2308 CTTTGTCAGCGCAGACGGTCGTGTTCGTAAAAAGTTCTGTGAATATGTCAGTGAAAATCT 2367 ||||||| | | ||| |||| | ||||||||||||||| | | ||| || ||| ||||| Sbjct 1369873 CTTTGTCCGTGTAGAAGGTCCTATTCGTAAAAAGTTCTTTAACTATATCCATGATAATCT 1369814 Query 2368 TGAATATGGACCAAAAAATTCTCCGAATATATCAGAGTTCTTTTCTTGCCGCAATGACTG 2427 || | |||||||| ||||| ||| ||| |||||||||| |||||| ||||||||||| Sbjct 1369813 GGACTTTGGACCAAGAAATTATCCAGCTATGTCAGAGTTCTATTCTTGTCGCAATGACTG 1369754 Query 2428 CTGCGTTTTATTTCATCGTTGTGCTAAAGCCGGTATTGTTCGCAGCCCCATGCCAGTACA 2487 |||| |||||||||||||||||||||||| | ||||||||||||| |||||||| |||| Sbjct 1369753 CTGCATTTTATTTCATCGTTGTGCTAAAGAAGTTATTGTTCGCAGCTCCATGCCAATACA 1369694 Query 2488 GACCC---------AT-CCACC-ATTCATGTTAGCCGTCTAGATGAGCAAATGCAAGTAG 2536 |||| || || || || | | | ||| | | ||| |||||| || ||| Sbjct 1369693 -ACCCGAACGTCTAATACCTCCAATACCTCATTGCCAACAAAGTGAACAAATGTAATTAG 1369635 Query 2537 TTTAGCCATCGACTGGTTGCGCATGGTAAC 2566 || ||||||| ||||||||| ||| ||||| Sbjct 1369634 TTCAGCCATCAACTGGTTGCACATCGTAAC 1369605 Score = 246 bits (272), Expect = 8e-62 Identities = 265/346 (77%), Gaps = 15/346 (4%) Strand=Plus/Minus Query 1369 GCGATCAGTCAGTCCTGAGTTTCTAATTGCGCTCGGCTTGATGAAGGTTACAACAGATGA 1428 ||||||||||||||| ||||||| |||||||||||||||||||||||||| | | || Sbjct 1370857 GCGATCAGTCAGTCCGACGTTTCTACGTGCGCTCGGCTTGATGAAGGTTACAATAAAAGA 1370798 Query 1429 AACAACAGTTGGGAGTGTTTCAGTTTCTACATCACGTGACACTGCTGAAACCGATAAGAG 1488 |||||||||| ||||||| || |||||| ||| |||| || |||||||||||| Sbjct 1370797 AACAACAGTTACGAGTGTTCCACTTTCTAAATCGCGTGGTACCA---AAACCGATAAGAA 1370741 Query 1489 AGGCGCTCGCTCTACTCGCATATCTGCGAGCGCGGAAGTGATACGTCGTCCGCACAAGGA 1548 | || | ||||| | || | || ||||| ||| ||||||||| |||| ||| | Sbjct 1370740 CGTCGGTGGCTCTCAT-GCTT--CTACGAGCAAAGAACTGATACGTC---CGCATAAGAA 1370687 Query 1549 AAAGTCCCGGTGCAAATCAGCTGCTACAGCAAGCAGTACTGCAAAGAAAACTTGTGTGGT 1608 | |||| || ||||| | ||| |||| |||||||| || ||||||||| ||| | Sbjct 1370686 ACGTTCCCAGTCGAAATCTGTTGC---AGCACGCAGTACTACAGAGAAAACTTTTGTAAT 1370630 Query 1609 GAAAGAAGAACATGTTTCGAAACCTAGAGAACGAGCGAAGAAGAGGACTCGTGCGGAATC 1668 |||| ||||||||||||| ||| ||| || |||||||||||||||| | |||| | | Sbjct 1370629 GAAAAAAGAACATGTTTCAAAATCTAAGGACCGAGCGAAGAAGAGGAGCCATGCGACACC 1370570 Query 1669 AATCGACAAACCTCAAAGCATAATACCGGCACCCGTTGTTACGAAG 1714 | ||||||||||||||||| | ||| | | |||||||| |||| Sbjct 1370569 ATTCGACAAACCTCAAAGC---AAACCAGTAGTCGTTGTTAAGAAG 1370527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13811121146680