Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_008993.1 Length=5530 Score E Sequences producing significant alignments: (Bits) Value seq17 118 4e-23 seq479 105 2e-19 seq212 86.0 2e-13 seq57 80.6 9e-12 seq496 78.8 3e-11 seq112 78.8 3e-11 >seq17 Length=585805 Score = 118 bits (130), Expect = 4e-23 Identities = 154/219 (70%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 3952 CGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTC 4011 ||||||| |||||| || | |||||||| |||| |||||||| | ||||| || || Sbjct 274477 CGGAAAGTGGCAAC---CGTGGCGCTGCGCGAAACAAAGTTGCCGCTTTCCGCCTCTATC 274533 Query 4012 GGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCTCAGACCACATGTT 4071 | | ||||||||||| |||| || || ||| ||| | ||||||||||| |||||||| Sbjct 274534 GAGGAGAAAAATAGTATACACACTATGGACAGTAAATAAGAAAGCCTCAGATCACATGTT 274593 Query 4072 TGTTTGGNNNNNNNNNNNNNNNNNNNNNTCGGCCAACAGTTACATGTGATCTGAGACTTT 4131 |||| |||||||||| |||||||| |||||| || || Sbjct 274594 TGTT---------AACCTCGACTTTGCCTCGGCCAACAATTACATGTCATCTGAAACATT 274644 Query 4132 TGTTATTTTTCTGGCCTACGTATGTAATATACTATTCTT 4170 | ||| | ||| ||| || |||||||| |||||||| Sbjct 274645 TCTTACTCCACTGCTCTAGGTGTGTAATATGCTATTCTT 274683 >seq479 Length=3228869 Score = 105 bits (116), Expect = 2e-19 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 3933 TTGTTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTT 3992 || |||||| |||||| ||||||||| | | |||| ||||||||| |||||||||| Sbjct 2933512 TTTTTTTCTCCCCTCCGCGCGGAAAGCGACGAATTTCATCCCGCTGCGCGAAACGAAGTT 2933571 Query 3993 GCCACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTA 4052 | | | || || || ||| | | ||||||||||| |||| ||| ||| ||| ||| | | Sbjct 2933572 GTCGCTTTTCGCCTCCGTTGAGAAGAAAAATAGTATACACACCACGGGCAGTAAATAAGA 2933631 Query 4053 AAGCCTCAGACCACATGT--TTGTT 4075 | |||||||| ||| ||| ||||| Sbjct 2933632 AGGCCTCAGATCACTTGTAATTGTT 2933656 >seq212 Length=2700027 Score = 86.0 bits (94), Expect = 2e-13 Identities = 97/130 (75%), Gaps = 4/130 (3%) Strand=Plus/Plus Query 3933 TTGTTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTT 3992 || |||||| |||||| | ||||||||||||||| | |||| |||| || || Sbjct 573927 TTTTTTTCTCCCCTCCGGGCAGAAAGCGGCAACTTTGTTTC----GCGCGAAACCAAATT 573982 Query 3993 GCCACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTA 4052 ||| | ||| |||| ||||| | ||||||||||| |||| ||| || ||| || | | Sbjct 573983 GCCGCTTTCTGGCTCCGTCGAGGAGAAAAATAGTATACACACCATGGGCAGTTAATAAAA 574042 Query 4053 AAGCCTCAGA 4062 |||||||||| Sbjct 574043 AAGCCTCAGA 574052 >seq57 Length=528912 Score = 80.6 bits (88), Expect = 9e-12 Identities = 85/111 (77%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 3927 GATAACTTG--TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAA 3984 || |||||| |||||| ||| || |||||||||||| ||||| ||||||||| || Sbjct 377558 GAAAACTTGATTTTTCTTCCCACCGGGCGGAAAGCGGCATTTTTCGTCCCGCTGCGCGAA 377617 Query 3985 ACGAAGTTGCCACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACC 4035 || |||||||| | || | || ||| | | ||||||||||| || | ||| Sbjct 377618 ACTAAGTTGCCGCTTTTCACCTCCGTTGAGGAGAAAAATAGTATAAACACC 377668 >seq496 Length=1672140 Score = 78.8 bits (86), Expect = 3e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 4100 TCGGCCAACAGTTACATGTGATCTGAGACTTTTGTTATTTTTCTGGCCTACGTATGTAAT 4159 |||||||||| |||||||||||| ||||| ||| ||| ||| ||| |||| || ||| || Sbjct 1645224 TCGGCCAACAATTACATGTGATCCGAGACATTTCTTACTTTACTGCCCTAGGTGTGTTAT 1645283 Query 4160 ATACTATT 4167 |||||||| Sbjct 1645284 ATACTATT 1645291 >seq112 Length=1786610 Score = 78.8 bits (86), Expect = 3e-11 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 4100 TCGGCCAACAGTTACATGTGATCTGAGACTTTTGTTATTTTTCTGGCCTACGTATGTAAT 4159 ||||||||| |||||||||||||||||| ||| || ||| ||| |||| || |||||| Sbjct 518935 TCGGCCAACGATTACATGTGATCTGAGACATTTCATACTTTACTGTCCTAGGTGTGTAAT 518994 Query 4160 ATACTATTCTT 4170 |||||||| || Sbjct 518995 ATACTATTTTT 519005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17583899606350