Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq138 105 5e-18 seq157 96.9 3e-15 seq30 96.9 3e-15 seq68 93.3 3e-14 >seq138 Length=12648 Score = 105 bits (116), Expect = 5e-18 Identities = 90/106 (85%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || |||||||| || Sbjct 1601 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGAAA 1660 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTATGG 114435 ||| ||||||| || ||||||||||| ||| || ||||| ||||| Sbjct 1661 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA-TATGG 1705 Score = 105 bits (116), Expect = 5e-18 Identities = 90/106 (85%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || |||||||| || Sbjct 1601 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGAAA 1660 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTATGG 115632 ||| ||||||| || ||||||||||| ||| || ||||| ||||| Sbjct 1661 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA-TATGG 1705 >seq157 Length=387809 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/103 (83%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 115534 GTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAACCA 115589 ||||| |||||||||||||||| ||||||||||||| || | || |||||||| ||||| Sbjct 56616 GTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGAAACCA 56557 Query 115590 AAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTATGG 115632 ||||||| || ||||||||||| | | || ||||| ||||| Sbjct 56556 TAACTGATTTAATGAGCCATTCGCGATTTCACCTTAA-TATGG 56515 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/103 (83%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 114337 GTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAACCA 114392 ||||| |||||||||||||||| ||||||||||||| || | || |||||||| ||||| Sbjct 56616 GTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGAAACCA 56557 Query 114393 AAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTATGG 114435 ||||||| || ||||||||||| | | || ||||| ||||| Sbjct 56556 TAACTGATTTAATGAGCCATTCGCGATTTCACCTTAA-TATGG 56515 >seq30 Length=102876 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/106 (83%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| ||||| |||||||||| ||||||| ||||| || | || |||||||| || Sbjct 97741 CATGTATTAGCTCTGGAATTACCACAGTTATCCGAGTAAATGTGGGTACGATCTAAGAAA 97800 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTATGG 114435 ||| ||||||| || ||||||||||| ||| || ||||| ||||| Sbjct 97801 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA-TATGG 97845 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/106 (83%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| ||||| |||||||||| ||||||| ||||| || | || |||||||| || Sbjct 97741 CATGTATTAGCTCTGGAATTACCACAGTTATCCGAGTAAATGTGGGTACGATCTAAGAAA 97800 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTATGG 115632 ||| ||||||| || ||||||||||| ||| || ||||| ||||| Sbjct 97801 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA-TATGG 97845 >seq68 Length=1569599 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/106 (82%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 ||||||| |||||||||||||||| ||||||||||||| || | || |||| ||| || Sbjct 99539 CATGTATCAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCCAAGAAA 99480 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTATGG 115632 ||| |||||| |||||||||||||| ||| || || || ||||| Sbjct 99479 CCATCACTGATTTATTGAGCCATTCGCGGTTTCACCTCAA-TATGG 99435 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/106 (82%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 ||||||| |||||||||||||||| ||||||||||||| || | || |||| ||| || Sbjct 99539 CATGTATCAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCCAAGAAA 99480 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTATGG 114435 ||| |||||| |||||||||||||| ||| || || || ||||| Sbjct 99479 CCATCACTGATTTATTGAGCCATTCGCGGTTTCACCTCAA-TATGG 99435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397059873938644