Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq223 163 7e-35 >seq223 Length=3708094 Score = 163 bits (180), Expect = 7e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | || || | ||||| ||| |||||| ||||| || ||||| | Sbjct 238930 TCCACCGCGGAGACGGAGGACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGA 238871 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || ||||| ||||| ||||| || |||||||| | ||| || ||| Sbjct 238870 AAGGGTGCGGCCATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGG 238811 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||| || || |||||||| || || || || ||||| || | |||| | ||| || Sbjct 238810 GATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGAC 238751 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||||| |||||| ||||| |||||||| Sbjct 238750 ATCGAGAGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 Score = 154 bits (170), Expect = 3e-32 Identities = 174/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | ||| || | |||| || |||||| ||||| || |||| Sbjct 241188 CATG-CCTCCACGGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGT 241130 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| ||||| || ||||| ||||| ||||| || |||||||| | ||| || Sbjct 241129 CGGAGAGGGTGCGGCCATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTG 241070 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||||||| || || |||||||| || || ||||| || || |||| ||| | || Sbjct 241069 GTGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCGATAGTATCAGATGCTT 241010 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || ||||| || || ||||||||||||||||| || || ||||| Sbjct 241009 CGACTTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 240958 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || | || | || ||| |||||||| || ||||||| Sbjct 239386 TCCACCACGTAGACGAAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 239327 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || || || |||||||| || || ||||| |||||||||||| ||| Sbjct 239326 CAAGGTACGGCCATCCTCCAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGG 239267 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||||||| ||||| ||||| || || || ||||| |||| |||| | ||| || Sbjct 239266 GATTCCTTCTTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGAC 239207 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || ||||| ||||||| ||||| |||||||| ||||| Sbjct 239206 TTCCAAGGTAATTGTCTTTCCGGTCAAGGTCTTTACGAATATTTGCAT 239159 Score = 147 bits (162), Expect = 5e-30 Identities = 178/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| ||||| || || | |||| ||| ||| |||||||| || |||| Sbjct 238705 CATG-CCTCCGCGAAGTCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGT 238647 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| |||||||| |||||||||||||| || |||| | ||| ||| Sbjct 238646 CCGAAAGGGTGCGGCCGTCTTCCAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCG 238587 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||||| ||||| |||||||| || || || ||||| || || | ||| | | Sbjct 238586 GAGGGATTCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCCT 238527 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481 | || ||||| |||||||| ||||| || || || || || || |||||||| || |||| Sbjct 238526 CAACCTCGAGGGTGATCGTTTTCCCCGTGAGGGTTTTCACAAAGATCTGCATGAT-TTAT 238468 Score = 134 bits (148), Expect = 3e-26 Identities = 173/236 (73%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || |||| ||| || | || | |||| ||| || || ||||| |||| Sbjct 239161 CATG-CCTCCACGAAGTCGAAGAACCAAGTGCAGCGTGGATTCCTTCTGAATATTGTAGT 239103 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | | |||||| || || || | ||||| || || ||||| |||||||| ||| | Sbjct 239102 CCGACAACGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATAAGACGCTGCTGA---T 239046 Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| |||||||||||| ||||| ||||| |||||||| ||||| || | || | Sbjct 239045 CTGGCGGGATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCGATCGTGTCAGAGG 238986 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||||| || || || || || || |||| ||||| ||||| ||||||||| Sbjct 238985 CCTCTACTTCCAGAGTAATAGTTTTGCCCGTCAATGTCTTAACGAAGATCTGCATT 238930 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||||||||||| | ||||| || ||||| || || || || ||||| Sbjct 240921 TTCCTTTTGAATATTATAGTCGGACAAGGTGCGACCATCTTCCAACTGCTTACCGGCGAA 240862 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | |||||||| ||| || || ||||| |||||||| |||||||||||||| Sbjct 240861 AATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCCTGGATCTTCGCTTTCACGTT 240802 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| | ||| ||||| || ||||| || || ||||||| ||| ||||| Sbjct 240801 CTCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTTTTACCGGTCAAAGTTTTGAC 240742 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 240741 AAAAATCTGCAT 240730 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | || |||||| ||||| || ||||||| Sbjct 241640 CCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAC 241581 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||||| || || ||||| ||||||||||| ||||| Sbjct 241580 AGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGG---TCTGGC 241524 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| ||||| ||||| |||||||| ||||| || | || | ||| Sbjct 241523 GGAATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCA 241464 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || || || || || || |||||||| || ||||| Sbjct 241463 ACTTCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| || || ||||| | ||| ||| || || || || ||||| | Sbjct 241412 CCACCTCGCAGTCTGAGGACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGAC 241353 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| ||||| ||||| |||||||||| | || || |||| Sbjct 241352 AAGGTACGCCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGG 241293 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || |||||||| || ||||||||||| || || | ||| | ||| || Sbjct 241292 ATTCCCTCCTTGTCCTGGATCTTTGCTTTCACGTTCTCGATGGTGTCGGATGCTTCAACC 241233 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || ||||||| |||||| ||||| || ||||| Sbjct 241232 TCCAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 241186 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| ||||||| | ||||| || ||||| || ||||| || || || Sbjct 240034 TTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTACCGGCAAA 239975 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | |||||| |||||| ||||||||||| ||||||||||| ||||| || Sbjct 239974 GATCAATCTTTGTTGA---TCTGGGGGAATTCCTTCTTTGTCCTGGATTTTTGCTTTGAC 239918 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | ||| | || ||||| | ||||| ||||| || || | || || Sbjct 239917 GTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTTACCAGTTAACGTTTT 239858 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 239857 CACAAAAATTTGCAT 239843 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || | ||| | ||| ||| || || || |||||||||| Sbjct 240297 CCTCCCCGGAGACGTAGAACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCGGAC 240238 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| || ||||| || |||||||| | | ||||| |||||| Sbjct 240237 AAGGTGCGACCATCTTCCAACTGTTTACCCGCGAAGATTAATCTTTGTTGG---TCTGGG 240181 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||||||||| || ||||| ||||| || || || | || | ||| Sbjct 240180 GGGATTCCTTCTTTATCCTGAATCTTCGCCTTCACATTCTCAATGGTGTCAGAAGCTTCG 240121 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || || | ||| || || || || ||||| Sbjct 240120 ACTTCCAAGGTGATGGTCTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 240071 Score = 107 bits (118), Expect = 5e-18 Identities = 142/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || |||||||| ||||| | | ||||| || ||||| || ||||| || ||||| Sbjct 239578 TTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGTTTGCCGGCGAA 239519 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || | | ||||| |||||| || |||||||||||||| || || || || || Sbjct 239518 AATTAATCTTTGTTGG---TCTGGGGGGATGCCTTCTTTATCCTGAATCTTTGCCTTAAC 239462 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | ||| | || ||||| | ||||| || || ||||| ||||| || Sbjct 239461 GTTTTCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATTGTTTTACCGGTAAGAGTTTT 239402 Query 288459 GACGAATATCTGCATT 288474 ||| || || |||||| Sbjct 239401 GACAAAAATTTGCATT 239386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179646510323916