Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq201 104 3e-17 seq246 102 9e-17 seq346 100 3e-16 seq223 98.7 1e-15 seq490 96.9 4e-15 seq496 91.5 2e-13 >seq201 Length=1490881 Score = 104 bits (114), Expect = 3e-17 Identities = 79/92 (86%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 876237 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 876178 Query 57058 TCACCACTATACTACCGAGGA-TTGAATATAT 57088 | ||||||||||||||||||| ||||| |||| Sbjct 876177 TTACCACTATACTACCGAGGACTTGAAGATAT 876146 >seq246 Length=2929822 Score = 102 bits (112), Expect = 9e-17 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 56980 AACAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCG 57039 |||||| || || | ||||| | |||| |||| | |||||||||| ||||||||| Sbjct 1760637 AACAAAAAAATTTTAGTTAAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCG 1760696 Query 57040 CGTGACAGGCGGACATACTCACCACTATACTACCGAGGATT 57080 |||||||||||| ||||| ||||||||||||||||||||| Sbjct 1760697 CGTGACAGGCGGGGATACTTACCACTATACTACCGAGGATT 1760737 >seq346 Length=1589992 Score = 100 bits (110), Expect = 3e-16 Identities = 74/85 (87%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 56995 ATGAAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 || |||||| |||||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 422224 ATAAAAAATAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 422283 Query 57054 ATACTCACCACTATACTACCGAGGA 57078 ||||| ||||||||||||||||||| Sbjct 422284 ATACTGACCACTATACTACCGAGGA 422308 >seq223 Length=3708094 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||| | |||| ||||| ||||| ||||| || | || || ||| | || || | || Sbjct 241389 ATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGACAAGGTACGCCCATCTTCCAATTG 241330 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| || ||||| || | || |||||||| | ||| | | |||||||||| ||| || Sbjct 241329 CTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTT 241270 Query 42125 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | ||| | || | | |||||| | ||| || || | ||||||||||| || || Sbjct 241269 TGCTTTCACGTTCTCGATGGTGTCGGATGCTTCAACCTCCAGGGTGATGGTTTTACCGGT 241210 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 | |||||||| ||||||||||| Sbjct 241209 CAAAGTCTTTACGAAGATTTGCAT 241186 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 || |||||||| ||| ||||||||||| |||||||| | || || ||| | || ||| Sbjct 239823 ACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTCT 239764 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || || || ||||| || || | || ||||||||| | ||| | | ||| |||| | || Sbjct 239763 AGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGT-CTTG 239705 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | |||| || | | | | |||||| | ||| || || | ||||| || || Sbjct 239704 AATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTT 239645 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| ||||| ||||| || ||||| Sbjct 239644 ACCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||||||||| || || | || || || | || || | ||||||||| ||||| Sbjct 240920 TCCTTTTGAATATTATAGTCGGACAAGGTGCGACCATCTTCCAACTGCTTACCGGCGAAA 240861 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | |||||| ||||| | ||| | | ||| |||||| ||| || ||| | || Sbjct 240860 ATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCCTGGATCTTCGCTTTCACGTTC 240801 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| | ||| || || | ||||||||||| || || | || || ||| Sbjct 240800 TCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTTTTACCGGTCAAAGTTTTGACA 240741 Query 42198 AAGATTTGCAT 42208 || || ||||| Sbjct 240740 AAAATCTGCAT 240730 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | |||| |||||||| | || || || || || ||||| || | Sbjct 241641 ACCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGA 241582 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || | || || ||||| || || || || ||||| ||||| ||||| | || Sbjct 241581 CAGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGG 241522 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || |||||| ||| |||| | ||| | | | | ||||| | ||| | Sbjct 241521 AATTCCTTCTTTGTCC-TGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAA 241463 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||||||||| ||||| || || || ||||||||||| Sbjct 241462 CTTCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 >seq490 Length=1461854 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 687765 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 687706 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 687705 TACTACCGAGGAT 687693 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| || | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 687923 AAATATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 687864 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 687863 TTACCACTATACTACCGAGGA 687843 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 687468 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 687409 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 687408 TACTACCGAGGA 687397 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 687616 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 687557 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 687556 TACTACCGAGGA 687545 >seq496 Length=1672140 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || |||||||| |||| ||||| || | || ||||| || |||||||| || | Sbjct 1564667 CCTTCTGGATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGA 1564608 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | || |||||| || | ||| | | ||||||||| ||| || |||| | Sbjct 1564607 TCAATCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTT 1564548 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | || ||| | ||||| || | ||||||||||| ||||| || ||||| || | Sbjct 1564547 CAATAGTATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGA 1564488 Query 42199 AGATTTGCAT 42208 |||| ||||| Sbjct 1564487 AGATCTGCAT 1564478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209255536480